Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g390 ATGGAAGATGTCCGAGAACCTTCAGCTTCTCCTTGTGTGGGTTCCGGCAACATTGGGGGAGAAAATGCGGAAGGGAAGGTTCATCCTGTTGCAGATGGAGAACACCTTTCCAGTCTCTCTGTCTCGATTTCGGCTGAAGACTCAGCAACTCTAAATATGGAGGAGAGAAAGGAGGGGCCTTCTCCAAGAGGAGTTCTTGAGGGCTGCTTAAGAAGTGTAGAATCTGAAACAGCTTCTTCCAAGGCCAGTACTTCAGACTCAGAAACTCCCTCGAATACAAGATCTGCTTCTAACTGGCATAGATTCTCCCAGTTATTTAAAAAAGGATCTGCAATGGGCTTGCAAACCTTACCTTCCCTAGGCATCCGGAAGCTCTCAAGAAGTAAAAGCAGAAGGGCAAGAGGAAGCATGATTCCAGCACTGTATCCCTCTTTAGATGCTGGATTATGCTTAATGAAACCTTCATGGAAAGCTTTCTCGTTATCAGAGCTTGAAACTGCAACTGACAATTTCAGCCATAAGAATTTAATTGGAGAAGGAGGATATGCTGAAGTTTACAAGGGACAATTGCAAGATGGGCAGTTTGTTGCGATCAAGCGTATTATCAGAGGAACCCCAGAAGAGATGACAGTAGACTTCTTATCCGAGCTCGGGATTATAGTCCATATTGACCATCCCAATACAGCTAAATTAGTTGGTTATGGTGTTGAAGGCGGAATGCACCTTGTTCTTTATTTGTCTCCTCATGGGAGCTTAGCTTCCCTCCTATACAGCCCGGAGAAGAAGCTAGAATGGGAAATCAGATACAAGATTGCTTTAGGGACAGCTGAGGGCCTTGGTTATCTTCATGAGGGGGGCCAAAGAAGAATCATCCACAGAGACATAAAGGCTTCTAATATTTTGCTTAAAGAGGATTTTGAGCCTCAGATTTCTGATTTTGGGCTTGCAAAGTGGCTACCTGAGCAGTGTACTCACCATATTGTATCAGGATTTGAAGGCACTTTCGGCTACCTTCCTCCTGAGTACTTCTTGCATGGCATAGTCGATGAAAAGACAGATGTATATGCCTACGGAGTGCTACTATTAGAGCTCATCACCGGACGCCCAGCTCTGGATAGCTCACAGAAAAGCCTTGTGATGTGGGCCAAACCTTTGCTTATTAACAATAGTATTGATGAGCTTGTTGATCCAAGGCTTGCCGACGCTTACGACTCAGAACAGATGAACATTGTGGCTACAGTCTCTAGTTTGTGCCTTCATCAGTCTTCTGTTCAACGACCTCGAATGAACCAGGTGGTGCAGGTTCTAAAAGGTAGAGAAGACATTTCCACCCTTGGAAAGCGATACCAAAAGCCTATTCTCCAGAGGACATATTCTGAGGAGCTCCTTGATGCTGAAGAATACAACTCAACAAAGCACTTGAACGATCTGAGTAGGCATATGGAGATTCTTTTGGAGATCTAA 1464 44.67 MEDVREPSASPCVGSGNIGGENAEGKVHPVADGEHLSSLSVSISAEDSATLNMEERKEGPSPRGVLEGCLRSVESETASSKASTSDSETPSNTRSASNWHRFSQLFKKGSAMGLQTLPSLGIRKLSRSKSRRARGSMIPALYPSLDAGLCLMKPSWKAFSLSELETATDNFSHKNLIGEGGYAEVYKGQLQDGQFVAIKRIIRGTPEEMTVDFLSELGIIVHIDHPNTAKLVGYGVEGGMHLVLYLSPHGSLASLLYSPEKKLEWEIRYKIALGTAEGLGYLHEGGQRRIIHRDIKASNILLKEDFEPQISDFGLAKWLPEQCTHHIVSGFEGTFGYLPPEYFLHGIVDEKTDVYAYGVLLLELITGRPALDSSQKSLVMWAKPLLINNSIDELVDPRLADAYDSEQMNIVATVSSLCLHQSSVQRPRMNQVVQVLKGREDISTLGKRYQKPILQRTYSEELLDAEEYNSTKHLNDLSRHMEILLEI* 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3956952 3960217 - Vvi5g390 Vvi5g390 786532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g390 487 SUPERFAMILY Protein kinase-like (PK-like) 156 458 IPR011009 -
Vvi5g390 487 Pfam Protein kinase domain 172 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g390 487 ProSitePatterns Protein kinases ATP-binding region signature. 177 199 IPR017441 GO:0005524
Vvi5g390 487 MobiDBLite consensus disorder prediction 73 98 - -
Vvi5g390 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672|GO:0006468
Vvi5g390 487 PANTHER PROTEIN KINASE FAMILY PROTEIN 53 466 - -
Vvi5g390 487 Gene3D Transferase(Phosphotransferase) domain 1 248 452 - -
Vvi5g390 487 PANTHER OS08G0249100 PROTEIN 53 466 - -
Vvi5g390 487 MobiDBLite consensus disorder prediction 1 98 - -
Vvi5g390 487 Gene3D Phosphorylase Kinase; domain 1 149 246 - -
Vvi5g390 487 SMART serkin_6 171 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g390 487 ProSiteProfiles Protein kinase domain profile. 171 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g390 - - - vvi:100257889 937.176
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g390 Vvi7g177 ECH
Vvi5g390 Vvi14g340 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g390 . Blo12g00063 . . Bpe04g01182 . Bma04g01062 . Cmo08g01162 . . . . . . . . . . . . . . . Cla06g00524 . . . . . . . Cone15ag0801 Cone7ag0189 . . . Chy11g01451 . . . . . . . . . . . . Cma08g01190 Cma17g00290 Car08g01067 Car17g00266 Cpe12g00242 Cpe17g00108 Bhi12g01765 . . . . . . . . . . . . . Lsi09g01380 . . Cme11g01956
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009081 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76663 PF00069 Pkinase 2.00E-38 CL0016 Vvi PK