Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g391 ATGTTTGCAAAAGAACCAGGTACTCCGAGCTTCGACCTACCCGAGGAAGTGCTCGAAGTTCTGCCCTCCGATCCATTCGAACAGCTCGATGTGGCTCGCAAAATCACCTCCATTGCGCTCTCCGCACGTGTCTCCGCCCTCGAATCTGAGGCTTCCGCTCTACGCTCCAAACTCGCCGACAAGGACGCCCTCGTCGCCGACCTCCACGATCAGATCGAGTCTCTCGACCATGCTCTCTCCGACGCCGCCGACAAGCTCTTCCTCGCCGAACAGGAGAAGGAGAACTTGCTGAAGGAGAACGCATCGTTGTCCAATACTGTGAAGAAGCTTAATCGTGATGTCTCCAAGTTGGAGAGCTTTAGAAAGACACTCATGCTATCACTTAAAGAGGATGAAGAGAGTTCTGGAGCATCTCCGCAGGTTGTTGCCAAACAGATGGCAGCCCAATCGAGTTTATCTTCTGCTTCAATGACTGGAGAAGACGATGCTACATCAAGATATTCTTCTACACGAAGCCAGTACTCAGAAATTGGAAATTCATTTGCAGAGGATCGGGAGACGGATGCCTCAAGAGCTGGCATATCACATGGCTTCCTCTTAGCATCCCAAACTAACACACCTCGGCTTACTCCTCCCGGCTCGCCTCCTACTCTATCCGCATCGGTATCCCCAAGGCGACATTCAATTTCACTTTCAACCTCAAGAGGAATGTTTGATGATAGGCCTTCAGTGCCCACTAGCCAGCACAGTTCAATGTCAAGCTCTGAGTCCGGATCACAAACTGGACGAACTCGAGTTGATGGAAAAGAGTTTTTCCGCCAAGTCAGGAGCCGTTTGTCTTACGAGCAGTTTGGTGCATTTCTAGCAAATGTCAAGGAACTAAATTCCCACAAGCAAACAAGAGAGGAGACGCTAAGGAAGGCAGATGAGATTTTTGGCCCAGATAACAAGGACCTCTATGCTGTATTCGAGGGATTGATCACTCGCAACGTCCATTGA 999 50.05 MFAKEPGTPSFDLPEEVLEVLPSDPFEQLDVARKITSIALSARVSALESEASALRSKLADKDALVADLHDQIESLDHALSDAADKLFLAEQEKENLLKENASLSNTVKKLNRDVSKLESFRKTLMLSLKEDEESSGASPQVVAKQMAAQSSLSSASMTGEDDATSRYSSTRSQYSEIGNSFAEDRETDASRAGISHGFLLASQTNTPRLTPPGSPPTLSASVSPRRHSISLSTSRGMFDDRPSVPTSQHSSMSSSESGSQTGRTRVDGKEFFRQVRSRLSYEQFGAFLANVKELNSHKQTREETLRKADEIFGPDNKDLYAVFEGLITRNVH* 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3961006 3965332 - Vvi5g391 Vvi5g391 786533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g391 332 PANTHER - 6 332 - -
Vvi5g391 332 Coils Coil 79 113 - -
Vvi5g391 332 PANTHER BNAC01G41860D PROTEIN 6 332 - -
Vvi5g391 332 MobiDBLite consensus disorder prediction 138 173 - -
Vvi5g391 332 MobiDBLite consensus disorder prediction 219 264 - -
Vvi5g391 332 MobiDBLite consensus disorder prediction 131 173 - -
Vvi5g391 332 MobiDBLite consensus disorder prediction 200 265 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g391 - - - vvi:100252741 578.941
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g391 . . . . . . . . Cmo08g01161 Cmo17g00278 . . Car06g01252 . . Cpe08g00225 . . . . . . . . Cla06g00525 Cam06g0564 Cec06g0564 Cco06g0571 Clacu06g0552 Cmu06g0548 Cre06g1317 Cone14ag0802 Cone15ag0802 . . Lsi05g01484 . Chy11g01450 Cme06g00674 . . . . Bpe05g00758 . . . . Cmo06g01451 . Cma08g01189 Cma17g00289 Car08g01065 Car17g00265 Cpe12g00241 Cpe17g00109 Bhi12g01766 . . . . . . . . . . . . . Lsi09g01379 Csa03g01399 Chy06g00642 Cme11g01955
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002295 1 3 1 0 1 2 3 2 2 2 1 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 7 1 63