Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g392 ATGGAGTACCATGAAAGCACCCTGCAACAAGATATGACAGAGCCACTGATGCAGCAAGATGAGAAGGGGAACATCTCCTTTGAAGAGGATGATGATCTCACGCCAAGAAACACCAGCCAGAATGGGTCTCTGGGAGTTGTATGGCTCAGCACAACAGTTGCAGTCTGGGGCTCTTTTCAGTTTGGATGTTGTGTGCACTACTCATCTCCCACTCAGACAGCTATCAGGAAGGATCTCAATCTTTCACTAGCTGAGTACTCAGTATTTGCTTCCATATTGGCAATTGGGGCGATGATTGGGGGGATTACAAGCGGGCATATCTCCAATTTCATTGGAAGGAAAGGGACAATGAGAGTGGCTGCTATTTTCTGCATTATAGGGTGGCTTGCCATTGGTTTTGCTGAGGGTGTTCTGTTGCTTGACATTGGAAGAATGTGCACAGGATATGGAATTGGAGTATTTTCTTATGTGGTACCAGTGTTCATTGCTGAAATAGCACCCAAGGATCTTCGTGGAGGATTCACATCATCGAATGAGCTCATGATTCAAGTTGGGGGATCCATCACTTACCTGCTAGGGACGGTTCTAACATGGAGAATGCTCGCTTTAGTTGGCCTGATTCCCTCCCTTATGCTGATCTTGGGAATGTTTTTTGTCCCGGAGTCTCCAAGATGGCTGGTGATGGTTGGACAACAGAGAGAATTCGAAGCTTCATTGCAGAGGCTGCGCGGAAAGGACGCTGATATTTCCTTCGAGGCTTCTGAAATCCAAGAATATACAGAAAAGCTTCAACAGATGCCTAAAATTAGGCTCCTGGATTTGTTCCAAAAAAGATACCTGCACTCGGTCATAATAGGAGTCGGATTGATGTTGTTCAAACAATTTGGGGGAATCAGTGCGATCGGCTCTTATGCAAGTGCGACTCTTGAATTAGCAGGATTTTCTTCAGGAAAATTTGGGACAATAGTCATTGGTTTGTGTCAGATTCCAGTGACTATCATAGCTGTGGCACTAATGGATAGATGTGGAAGAAGACCTCTTCTATTGGTATCTTCAGTGGGGACATTCTTGGGCACCTTTCTGATTGGACTTGCATTCTATTTGAAGGATCATGAGCTAGTACTAAAGTTGATCCCCATGATGGTCCTAGCTGGTGTACTGATCTACTTTTGGTCTTTTGCATCGGGGATAGGATCTGCTTCCTGGGTTATTATGTCCGAGATATTCCCCCTAAACGTAAAGGGAGCAGCTGGAAGCTTAGCCATATGGGCAAACTGGTTTGGTTCTTGGACTGTTTCCTACACTTTCAACTATCTCATAAGCTGGAGTAGCTCGGGTGCCTTCTTCCTGTATTCTGCTGTCTCTGCTGCAGCAATTTTGTTTGTGGCAAAGCTAGTACCAGAAACTAGAAGACGGACCCTGGAAGAAATTCAAGCTCACATGCTCTTCTCCAACTCCCACTCCTAA 1467 45.33 MEYHESTLQQDMTEPLMQQDEKGNISFEEDDDLTPRNTSQNGSLGVVWLSTTVAVWGSFQFGCCVHYSSPTQTAIRKDLNLSLAEYSVFASILAIGAMIGGITSGHISNFIGRKGTMRVAAIFCIIGWLAIGFAEGVLLLDIGRMCTGYGIGVFSYVVPVFIAEIAPKDLRGGFTSSNELMIQVGGSITYLLGTVLTWRMLALVGLIPSLMLILGMFFVPESPRWLVMVGQQREFEASLQRLRGKDADISFEASEIQEYTEKLQQMPKIRLLDLFQKRYLHSVIIGVGLMLFKQFGGISAIGSYASATLELAGFSSGKFGTIVIGLCQIPVTIIAVALMDRCGRRPLLLVSSVGTFLGTFLIGLAFYLKDHELVLKLIPMMVLAGVLIYFWSFASGIGSASWVIMSEIFPLNVKGAAGSLAIWANWFGSWTVSYTFNYLISWSSSGAFFLYSAVSAAAILFVAKLVPETRRRTLEEIQAHMLFSNSHS* 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3968916 3972344 + Vvi5g392 Vvi5g392 786534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g392 488 ProSiteProfiles Major facilitator superfamily (MFS) profile. 50 470 IPR020846 GO:0022857
Vvi5g392 488 Pfam Sugar (and other) transporter 53 479 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vvi5g392 488 PANTHER - 44 481 - -
Vvi5g392 488 SUPERFAMILY MFS general substrate transporter 29 478 IPR036259 -
Vvi5g392 488 PRINTS Sugar transporter signature 141 160 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi5g392 488 PRINTS Sugar transporter signature 383 404 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi5g392 488 PRINTS Sugar transporter signature 406 418 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi5g392 488 PANTHER SUGAR TRANSPORTER ERD6-LIKE 7 44 481 - -
Vvi5g392 488 CDD MFS_GLUT6_8_Class3_like 49 476 IPR044775 GO:0008643|GO:0051119
Vvi5g392 488 TIGRFAM SP: MFS transporter, sugar porter (SP) family 32 477 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi5g392 488 Gene3D MFS general substrate transporter like domains 41 484 IPR036259 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g392 Vvi14g339 ECH
Vvi5g392 Vvi7g175 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g392 K03444 - vvi:100240820 963.755