Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g393 ATGGAGTACCATGAAAGCACCCGGCAACAAGATATGACAGAGCCACTCATCCGGCAAGATGAGAAGGGGAGCATCATCTCTGAAGAGGATGATGATCTCAAGCCAGAAAACCCCAGCCAGAAAGGGTCTCCGGGAGTTGAATGGCTCAGCACAGCTATTGCAGTCTGGGGCTCTTTTCAGTTTGGATGCTGTTTGAACTTGCAGGTGCACTACACATCCCCTACTCAGACAGCTATCAGGAAGGATCTCAATCTTTCACTAGCAGAGTACTCAGTATTTGCTTCCGTATTGGCAATTGGGGCAATGATTGGGGGGCTTACAAGCGGGCATATCTCCGATCTCATTGGAAGGAAAGGGACAATGAGAGTGGCTGCTGCTTTCTGCATTGTAGGGTGGCTTGCCATTGGTTTTACTGAGGGTGTTCTGTTGCTCGACCTTGGAAGAATGTGCACAGGATATGGAATTGGAATATTTTCTTATGTGGTACCAGTGTTCATTGCTGAAATAGCACCCAAGGATCTTCGTGGAGGATTCACATCATTGAATGAGCTCATGATTCAAGTTGGGGGATCCATCACTTACCTGCTAGGGACGGTTCTAACATGGAGAATGCTCGCTTTAGTTGGCCTGATTCCCTCCCTTATGCTGATCTTAGGAATGTTTTTTGTCCCTGAGTCTCCAAGATGGCTGGTGATGGTTGGACAACAGAGAGAATTCGAAGCTTCATTGCAGAGGCTGCGCGGAAAGGACGCTGATATTTCCTTCGAGGCTTCTGAAATCCAAGAATATACAGAAAAGCTTCAACAGATGCCTCAAATTAGGATCCTGGATTTGTTCCAAAAAAGATACCTGCACTCGGTCATAGTGAGCATTTTTCCTTTTCATTACTCAGGACTTTACTTGAAGCTATGGATCGGATTGATGTTGTTCAAACAATTTGGGGGAATGAGTGCCATCGGCTCTTATGCAAGTGCGACTCTTGAATTAGCAGGATTTTCTTCAGGAAAATTTGGGACAATAGTCATTGGTTTGTGTCAGATTCCAGTGACTACCATAGCTGTGGCACTAATGGATAGATGTGGAAGAAGACCTCTTCTATTGGTATCTTCAGTGGGGACATTCTTGGGCACCTTTCTGATTGGACTTGCATTCTATTTGAAGGATCATGAGCTAGTACTAAAGTTGATCCCCATGATGGTCCTAGCTGGTGTACTGATCTACTTATGGTCTTTGGCATCAGGGATAGGATCTGCTTCCTGGGTTATTATGTCCGAGATATTCCCCCTAAACGTAAAGGGTGCAGCTGGAAGCTTAGCCATATGGGCAAACTGGTTTGGTTCTTGGGCTGTTTCCTACACTTTCAACTATCTCATAAGCTGGAGTAGCTCGGGTACCTTCTTCCTGTATTCTGCTGTCTCTGCTGCAGCAATTTTGTTTGTGGCAAAGCTAGTACCAGAAACTAGAAGACGGACCCTGGAAGAAATACAAGCTCACATGCTCTTCTCCAACTCCCACTCCTAA 1521 45.63 MEYHESTRQQDMTEPLIRQDEKGSIISEEDDDLKPENPSQKGSPGVEWLSTAIAVWGSFQFGCCLNLQVHYTSPTQTAIRKDLNLSLAEYSVFASVLAIGAMIGGLTSGHISDLIGRKGTMRVAAAFCIVGWLAIGFTEGVLLLDLGRMCTGYGIGIFSYVVPVFIAEIAPKDLRGGFTSLNELMIQVGGSITYLLGTVLTWRMLALVGLIPSLMLILGMFFVPESPRWLVMVGQQREFEASLQRLRGKDADISFEASEIQEYTEKLQQMPQIRILDLFQKRYLHSVIVSIFPFHYSGLYLKLWIGLMLFKQFGGMSAIGSYASATLELAGFSSGKFGTIVIGLCQIPVTTIAVALMDRCGRRPLLLVSSVGTFLGTFLIGLAFYLKDHELVLKLIPMMVLAGVLIYLWSLASGIGSASWVIMSEIFPLNVKGAAGSLAIWANWFGSWAVSYTFNYLISWSSSGTFFLYSAVSAAAILFVAKLVPETRRRTLEEIQAHMLFSNSHS* 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3978961 3984862 + Vvi5g393 Vvi5g393 786535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g393 506 TIGRFAM SP: MFS transporter, sugar porter (SP) family 82 495 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi5g393 506 CDD MFS_GLUT6_8_Class3_like 49 494 IPR044775 GO:0008643|GO:0051119
Vvi5g393 506 MobiDBLite consensus disorder prediction 1 37 - -
Vvi5g393 506 Gene3D MFS general substrate transporter like domains 44 502 IPR036259 -
Vvi5g393 506 Pfam Sugar (and other) transporter 57 497 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vvi5g393 506 PRINTS Sugar transporter signature 98 117 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi5g393 506 PRINTS Sugar transporter signature 401 422 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi5g393 506 PRINTS Sugar transporter signature 424 436 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi5g393 506 PANTHER SUGAR TRANSPORTER ERD6-LIKE 7 44 499 - -
Vvi5g393 506 MobiDBLite consensus disorder prediction 1 44 - -
Vvi5g393 506 ProSiteProfiles Major facilitator superfamily (MFS) profile. 50 488 IPR020846 GO:0022857
Vvi5g393 506 PANTHER - 44 499 - -
Vvi5g393 506 SUPERFAMILY MFS general substrate transporter 50 496 IPR036259 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g393 Vvi14g338 ECH
Vvi5g393 Vvi7g175 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g393 K03444 - vvi:100263082 944.495