Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g395 ATGTGGAGGCGTCCAAAGCCCAAAGTTGTCATCAGGAGGTTTGGAAAGTTAATGAAACGCCAGCCTAAAGGGGTGCCCGGCTCCAGTAAATCTGCTATTCATCTCAACAGTCAACTGGGTCGTTCCATCTCTGGAAAGCCAATACGAATTGCCACATTTAATGCTGCCATGTTCTGCCTTGCACCAGCTATTGATACTTGGGCAAAATCTGAAAATTATCGTCCAAAGAGTATACTAAAGCAATCTCCTTTGCATTCCACCCCAAATACTCCTGATCATCTCTCCCAGCAGAAGCTCACAAGATCAAGACTGAAGGTTTCAATTAATCTCCCTGACAATGAGATATCATTAGCAAATAGCAAATTGCTTAGTTTTTGGGAAAGTGAAAAAGAGGGAAGCAGTAGAAGCATTCTTGAAGTACTTAGAGAGGTTAATGCTGATATCTTGGCTCTGCAAGATGTCAAGGCTGAGGAAGAAAAAGGCATGAAACCTCTTTCTGATCTAGCTGGTGCTCTAGGTATGAAATATGTGTTTGCTGAGAGCTGGGCTCCAGAGTTTGGGAATGCTATACTGTCTAAATGGCCAATTAAGAGGTGGAAAGCTCAAAAAATCATTGATGGTGAAGATTTCAGGAATGTCTTAAAGGCTACCATTGATGTGCCATGGGCAGGGGAAGTAAATTTCCATTGCACCCAACTTGACCATCTGGATGAGAACTGGAGGATGAAGCAAACAAATGCAATAATCCAATCAAGTGATTGCCCCCACATTTTGGCTGGAGGTCTCAACTCACTTAATGGATCAGATTACTCAAGAGAGAGATGGATGGATATCATCAAGTACTATGAGGAGATAGGAAAGCCTACACCAAAGGTTGATGTAATGGAGTTTCTGAAGGGAAAAGAGTATGTTGATGCAAAGAACTTTGCAGGGGAATGTGAGCCTGTTGTCATTATTGCCAAAGGCCAAAATGTTCAAGGGACATGCAAGTATGGGACGCGGGTGGATTACATTCTGGCTTCACAGGACTCACCGTACAAGTTTGTTCCCAGGTCATACTCTGTCATCTCATCCAAAGGTACTTCTGATCATCACGTAGTTAAGGTCGATATTGTAAAAGTTGATGAGAACGCTGAAGAGAACTTCATCAGGAGACACCGGAAACCAAAACAAAAGATTGTGAAGATGAGAAACCCTTGTTCCTCAAGAGGCATATGGCATATATAA 1227 42.54 MWRRPKPKVVIRRFGKLMKRQPKGVPGSSKSAIHLNSQLGRSISGKPIRIATFNAAMFCLAPAIDTWAKSENYRPKSILKQSPLHSTPNTPDHLSQQKLTRSRLKVSINLPDNEISLANSKLLSFWESEKEGSSRSILEVLREVNADILALQDVKAEEEKGMKPLSDLAGALGMKYVFAESWAPEFGNAILSKWPIKRWKAQKIIDGEDFRNVLKATIDVPWAGEVNFHCTQLDHLDENWRMKQTNAIIQSSDCPHILAGGLNSLNGSDYSRERWMDIIKYYEEIGKPTPKVDVMEFLKGKEYVDAKNFAGECEPVVIIAKGQNVQGTCKYGTRVDYILASQDSPYKFVPRSYSVISSKGTSDHHVVKVDIVKVDENAEENFIRRHRKPKQKIVKMRNPCSSRGIWHI* 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3999814 4002525 - Vvi5g395 Vvi5g395 786537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g395 408 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 64 134 - -
Vvi5g395 408 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 130 408 - -
Vvi5g395 408 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 1 65 - -
Vvi5g395 408 Pfam Endonuclease/Exonuclease/phosphatase family 127 364 IPR005135 GO:0003824
Vvi5g395 408 Gene3D Endonuclease/exonuclease/phosphatase 124 373 IPR036691 -
Vvi5g395 408 SUPERFAMILY DNase I-like 47 371 IPR036691 -
Vvi5g395 408 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 130 408 - -
Vvi5g395 408 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 64 134 - -
Vvi5g395 408 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 1 65 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g395 - - - vvi:100259606 793.497
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g395 Vvi7g170 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g395 . . . . . . . . . . . Cma14g01657 . Car14g01491 Sed02g1295 . Cpe03g01401 Bhi01g00893 Tan10g0919 Cmetu06g0465 . Hepe05g1499 . Lcy11g1475 . . . . . . . . . Cone7ag0192 . Lsi05g01479 . . Cme06g00670 . Blo07g00197 . . . Bpe13g00636 . Bma06g01528 . . Cmo14g01702 . . . . . . . . . . . . . Cla05g00599 Cam05g0659 Cec05g0666 . Clacu05g0652 Cmu05g0621 Cre05g0690 . Csa03g01396 Chy06g00639 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011959 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30