Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g397 ATGTCATCAATGGCTGTTAATGGCAGTAGTACCTGCGGCACTCAAGGTTCACCTTCTGTATCGGCCCAAGAAAAAGGAAGTAGGAATAAGAGAAAATTTCGGGCTGATCCTCCTCTAGGTGACCCCAATAAGATTGTCTCAAGTCAGGACCAATGTCTGAGTTATGAATTCTCTGCTGAGAAATTTGAAGTCACATCCAGCCATGGACAGCCAGGTGCATGTGGCATAGATGAATTAGAAGCAGATGATTTTCAGGATGCTGATTGGAGTGATCTTACTGAAAGTCAGCTTGAAGAACTTGTTTTGAGCAATTTGGACACAATTTTCAAGAGCGCAATTAAGAAAATTGTCGCATGTGGTTACAGTGAAGAAGTTGCTACAAAGGCTGTTTTGAGGTCTGGTCTTTGTTATGGTTGCAAAGACACCGTGTCGAATATAGTGGATAATACTTTAGCATTTCTTAGAAATGGCCAAGAGATTGATCCTTCAAGGGAACACTATTTTGATGATTTACAGCAGCTGGAGAAGTACATATTGGCGGAGTTGGTTTGTGTTCTTCGAGAAGTTAGACCTTTCTTTAGCACTGGGGATGCAATGTGGTGCTTGTTGATATGTGACATGAATGTATCACATGCTTGTGCAATGGATGGTGACTCTTTCACCCCAGAAGAAAAGTTTGGTCTCAGCAGAAAGGTGCATTCTGGTGGTACGAAGAGAGAATCTATGCTTCGACAGAAGTCACTCCATCTGGAGAAAAACTACCGAACATATGGATGTAAAGGGTCGTCAAGAACGGCGAAACTTAGTGGCTTAGGCAGTTATATGTTAGATAAGAAACTAAAATCTGTGTCTGATTCTACAGGAGTTAATCTGAAGAATGCTTCATTAAAAATAAGCAAGGCAATGGGAGTTGATGTGCCTCAAGACAATGGAAACCATAATCTTTCACCTAATTCCGGACTCTCTTCCTCTGCAGCATTTAATCTGGAAACTGTTAATACCATAGGTTCGTTACCTAAAACTAATAGCCCATCTGCATTACCTCCTGTCAATACCCCACCCATACCTTCAGGTGCCGACACAGAGCTTTCTCTTTCACTGACAACAAAAAGCAACTCTGCTCCTTCCCTGGGACAGTGGGTGCCACAAGACAAGAAGGATGAGATGATTCTAAAGCTGGTCCCAAGGGTGCGGGAATTGCAAAACCAGCTACAAGAGTGGACAGAATGGGCTAATCAAAAGGTTATGCAGGCTGCTCGTAGGCTGGGCAAGGACAAAGCCGAGCTCAAGACACTGAGGCAAGAGAAAGAAGAAGTAGAACGGCTCAAGAAAGAGAAACAAACCTTGGAGGATAACACTGCAAAGAAACTTTCTGAGATGGAGAATGCCTTGGGCAAGGCTAGTGGGCAGGTGGAGCGAGCTAATGCTGCTGTTCGGAGGCTTGAGGTGGAGAATTCTAGCCTCAGGCAAGAGATGGAGGCCGCTAAATTAGAAGCTGCTGAGTCAGCTGCAAGCTGTCAGGAGGTATCAAAGAGGGAGAAGAAGACATTGATGAAGTTTCAGACATGGGAGAAGCAGAAAGCTTTTTTTCATGAGGAGCTTACATCTGAAAAGCGCCGGCTGGCACAGCTGCGGCAGGAACTAGAGCAAGCCACAGAACTCCAGGATCAACTTGAGGCTAGGTGGAAACAGGAAGAGAAGGCAAAGGAAGAGCTTCTAATGCAGGCCAGTTCAACTAGAAAAGAAAGAGAACAGATCGAGGTTTCAGCAAAATCCAAGGAAGATATGATCAAACTAAAAGCAGAAGCTAATCTTCAGAAGTATAAAGATGATATCCAGAAACTTGAGAAACAAATCTCTGAATTGAGATTGAAGACTGACTCTTCAAAAATAGCTGCTCTGAGAAGGGGCATTGATGGAAGCTATGCTAGCAGATTGACAGACACCATAAACGGCTCAGCCCATAAGGAGAGTGAAACAAAAAACTCCAACCGCCATTTTTCGTTTTCTTCGACCTCTTCATTCTCTTCTGCAACCACTCGAGTGAAAATAACAACGGCAGTGAAGGGAATGATGATGAGGAGCAGTTCAGATGTTCATACTCAGACGCTCTTCAATGGCAAGTACGTTAATCAGATTGATCTTCTCCGAGACAATCGTCCTCCCTCGCTCCGGTTGAGCCGGTGTGGTCGTCGAGTTCGGCTCACTCGCTGTCAGGACTCAAGCAGCGCGTTCAAGCCCAAAAGGTGGGAGCCGCCGCTGGGAAGCCTATCCCGAGCGCAAGCCATCCTCACGCCGGTCTCAGACACTACTCCCACCACTAAGAAGCGGGTATTCACTTTTGGCAAAGGAAGGAGTGAGGGCAACAAGGGCATGAAGTCCTTGTTGGGAGGGAAAGGAGCCAACCTTGCAGAGATGGCGAGCATTGGGTTATCTGTGCCGCCTGGTCTCACCATATCAACGGAAGCATGCCAGGAGTATCAGCAGAATGGGAAGAAACTACCAGAGGGCCTGTGGGAGGAGATATTAGAAGGGTTGGAGAGTGTGGAGAAGGAAATGGGAGCTTTCCTTGGTGACCCTTCCAAGCCCCTCCTCCTCTCTGTTCGCTCTGGTGCTGCGATTTCCATGCCTGGAATGATGGACACTGTCCTCAACCTTGGACTAAACGATGAAGTAGTTGCTGGTTTAGCAGCAAAAAGTGGAGAGCGCTTTGCTTATGACTCATACAGACGCTTTCTAGACATGTTTGGAGATGTTGTAATGGGCATTCCACATTCATCATTTGAGGAGAAGTTAGAAAAATTGAAGGACGCCAAAGGAGTTAATCGTGATACTGGTCTGACAGCTGCACATCTCAAAGAGCTAGTGGAAATGTATAAGAATGTCTACCTTGAAGCTAAGGGTGAAAGGTTTCCTTCGGATCCAAAAAAGCAATTAGAGTTAGCAGTCAAAGCTGTTTTTGATTCTTGGGACAGTCCAAGGGCAATTAAATATCGGAGCATCAACCAGATAACTGGGTTAAAGGGGACTGCAGTGAACATTCAGTGCATGGTGTTTGGGAACATGGGAAATACTTCGGGTACTGGTGTTCTATTCACTAGAAATCCAAGCACCGGTGAAAAGAAGCTGTATGGGGAGTTTTTGCTCAATGCTCAGGGAGAGGATGTAGTTGCTGGAATTAGAACACCAGAGGATTTAGACACCATGAAAAATTGCATGCCTGAAGCCTTCAAGGAGCTTGTGGAGAACTGCGAAATTCTAGAGCGACATTACAAAGACATGATGGATATCGAATTCACTGTTCAAGAAAATAGGCTATGGATGTTGCAGTGCCGGTCTGGAAAGCGGACTGGAAAAGGGGCAGTGAAGATTGCTGTGGATTTGGTCAATGAAGGGCTCATTGATACTCGCACTGCGATCAAGATGGTAGAACCACAGCACCTCGACCAACTTCTCCATCCACAATTTGAGGCTCCAGCTGCATACAAAGAAAAGGTAGTTGCCACAGGGCTACCCGCATCTCCTGGAGCGGCTGTAGGGCAGGTTGTGTTCAGTGCTGAGGATGCTGAAGCATGGCATGCACAAGGAAAGAGTGTCATCTTGGTAAGGACAGAAACCAGCCCAGAGGATATTGGGGGCATGCATGCTGCTGTAGGGATCTTGACAGCCAGGGGTGGCATGACATCTCATGCAGCTGTTGTAGCCCGTGGGTGGGGAAAGTGTTGTGTTTCTGGCTGCTCTGACATCCGTGTAAATGACACTGAGAAGGTAGTTGTAGTTGGAGACAAAGTGATCAAAGAAGACGACTGGATTTCACTCAATGGGTCTACAGGTGAAGTGATCTTGGGAAAACAGGCACTTGCTCCACCGGCTCTGAGCGGTGATTTGGAGATCTTCATGTCTTGGGCTGATCAGATAAGGCATCTCAAGGTTATGGCGAATGCTGATACACCTGATGATGCTCTAACAGCAAGAAATAATGGCGCCCAAGGAATTGGACTTTGTAGGACAGAACACATGTTCTTTGCTTCAGATGAGAGGATAAAGGCAGTGAGAAAGATGATAATGGCAGCTACACATCAACAGAGGAAGGCAGCTTTAGACCTCTTATTGCCTTATCAAAGATCTGACTTTGAAGGCATATTCCGTGCAATGAATGGTCTACCTGTGACAATCAGACTGCTGGACCCTCCACTACATGAATTCCTTCCAGAAGGTGACCTAGACCATATTGTTGGTGAACTAACTGCAGAGACAGGCATGACTGAAGATGAAGTTTTCTCAAGGATTGAGAAATTATCAGAAGTAAATCCCATGCTTGGTTTCCGAGGCTGCAGGTTAGGGGTATCATACCCAGAACTAACTGAAATGCAGGCCCGAGCAATCTTTCAGGCTGCTGTCTCTATGAGCAGCCAGGGTGTTAAAGTTTTTCCAGAGATCATGGTTCCCCTTGTTGGAACACCTCAGGAACTAGGACACCAAGCGAGTTTAATACGTAGTGTTGCAAAACGTGTGTTTTCTGAGATGGGGTTGACCTTGAGCTATAAGGTGGGAACCATGATTGAGATTCCTAGGGCTGCTCTGGTTGCAGATGAGATTGCGAAGGAAGCAGAATTCTTCTCCTTTGGGACTAATGACCTCACACAAATGACCTTTGGGTACAGTAGAGATGATGTTGGCAAGTTTCTCCCAATATACCTATCCGAAGGCATTATCCAAAATGATCCATTTGAGGTACTTGATCAAAAAGGTGTAGGCCAACTCATCAAGATGGCCACAGAAAGAGGCCGTGCAGCTAGGCCTAGCTTGAAGGTTGGAATATGCGGGGAGCATGGTGGGGAGCCTTCCTCTGTTGCATTTTTTGCTGAGGCTGGATTAGACTATGTTTCTTGTTCTCCCTTCAGGGTTCCTATTGCTAGGCTAGCAGCAGCTCAAGTTGCTGCATAA 4947 46.07 MSSMAVNGSSTCGTQGSPSVSAQEKGSRNKRKFRADPPLGDPNKIVSSQDQCLSYEFSAEKFEVTSSHGQPGACGIDELEADDFQDADWSDLTESQLEELVLSNLDTIFKSAIKKIVACGYSEEVATKAVLRSGLCYGCKDTVSNIVDNTLAFLRNGQEIDPSREHYFDDLQQLEKYILAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAMDGDSFTPEEKFGLSRKVHSGGTKRESMLRQKSLHLEKNYRTYGCKGSSRTAKLSGLGSYMLDKKLKSVSDSTGVNLKNASLKISKAMGVDVPQDNGNHNLSPNSGLSSSAAFNLETVNTIGSLPKTNSPSALPPVNTPPIPSGADTELSLSLTTKSNSAPSLGQWVPQDKKDEMILKLVPRVRELQNQLQEWTEWANQKVMQAARRLGKDKAELKTLRQEKEEVERLKKEKQTLEDNTAKKLSEMENALGKASGQVERANAAVRRLEVENSSLRQEMEAAKLEAAESAASCQEVSKREKKTLMKFQTWEKQKAFFHEELTSEKRRLAQLRQELEQATELQDQLEARWKQEEKAKEELLMQASSTRKEREQIEVSAKSKEDMIKLKAEANLQKYKDDIQKLEKQISELRLKTDSSKIAALRRGIDGSYASRLTDTINGSAHKESETKNSNRHFSFSSTSSFSSATTRVKITTAVKGMMMRSSSDVHTQTLFNGKYVNQIDLLRDNRPPSLRLSRCGRRVRLTRCQDSSSAFKPKRWEPPLGSLSRAQAILTPVSDTTPTTKKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMASIGLSVPPGLTISTEACQEYQQNGKKLPEGLWEEILEGLESVEKEMGAFLGDPSKPLLLSVRSGAAISMPGMMDTVLNLGLNDEVVAGLAAKSGERFAYDSYRRFLDMFGDVVMGIPHSSFEEKLEKLKDAKGVNRDTGLTAAHLKELVEMYKNVYLEAKGERFPSDPKKQLELAVKAVFDSWDSPRAIKYRSINQITGLKGTAVNIQCMVFGNMGNTSGTGVLFTRNPSTGEKKLYGEFLLNAQGEDVVAGIRTPEDLDTMKNCMPEAFKELVENCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKGAVKIAVDLVNEGLIDTRTAIKMVEPQHLDQLLHPQFEAPAAYKEKVVATGLPASPGAAVGQVVFSAEDAEAWHAQGKSVILVRTETSPEDIGGMHAAVGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVNDTEKVVVVGDKVIKEDDWISLNGSTGEVILGKQALAPPALSGDLEIFMSWADQIRHLKVMANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAATHQQRKAALDLLLPYQRSDFEGIFRAMNGLPVTIRLLDPPLHEFLPEGDLDHIVGELTAETGMTEDEVFSRIEKLSEVNPMLGFRGCRLGVSYPELTEMQARAIFQAAVSMSSQGVKVFPEIMVPLVGTPQELGHQASLIRSVAKRVFSEMGLTLSYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPIYLSEGIIQNDPFEVLDQKGVGQLIKMATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPIARLAAAQVAA* 1649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4007202 4024721 - Vvi5g397 Vvi5g397 786539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g397 1648 TIGRFAM pyru_phos_dikin: pyruvate, phosphate dikinase 775 1647 IPR010121 GO:0006090|GO:0050242
Vvi5g397 1648 PANTHER PHOSPHOENOLPYRUVATE DIKINASE-RELATED 776 1646 IPR010121 GO:0006090|GO:0050242
Vvi5g397 1648 SUPERFAMILY Phosphohistidine domain 1161 1284 IPR036637 GO:0016310|GO:0016772
Vvi5g397 1648 MobiDBLite consensus disorder prediction 1 46 - -
Vvi5g397 1648 Coils Coil 415 498 - -
Vvi5g397 1648 PANTHER PYRUVATE, PHOSPHATE DIKINASE 776 1646 - -
Vvi5g397 1648 Gene3D - 1019 1116 - -
Vvi5g397 1648 Pfam PEP-utilising enzyme, PEP-binding domain 1292 1646 IPR000121 GO:0016310|GO:0016772
Vvi5g397 1648 ProSitePatterns PEP-utilizing enzymes signature 2. 1538 1556 IPR023151 GO:0016772
Vvi5g397 1648 MobiDBLite consensus disorder prediction 339 362 - -
Vvi5g397 1648 Gene3D Phosphohistidine domain 1158 1284 - -
Vvi5g397 1648 Pfam PEP-utilising enzyme, mobile domain 1197 1278 IPR008279 GO:0016310|GO:0016772
Vvi5g397 1648 Coils Coil 598 632 - -
Vvi5g397 1648 Gene3D Pyruvate Phosphate Dikinase, domain 2 1117 1305 - -
Vvi5g397 1648 Gene3D - 887 971 - -
Vvi5g397 1648 Gene3D - 1308 1648 IPR040442 -
Vvi5g397 1648 ProSitePatterns PEP-utilizing enzymes phosphorylation site signature. 1225 1236 IPR018274 GO:0016310|GO:0016772
Vvi5g397 1648 Gene3D - 778 1018 IPR013815 GO:0005524
Vvi5g397 1648 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 776 1154 - -
Vvi5g397 1648 Coils Coil 527 575 - -
Vvi5g397 1648 MobiDBLite consensus disorder prediction 1 24 - -
Vvi5g397 1648 Pfam Family of unknown function (DUF6592) 104 215 IPR046527 -
Vvi5g397 1648 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 1294 1646 IPR015813 GO:0003824
Vvi5g397 1648 Pfam Pyruvate phosphate dikinase, AMP/ATP-binding domain 1076 1131 IPR002192 GO:0005524|GO:0016301|GO:0016310
Vvi5g397 1648 Pfam Pyruvate phosphate dikinase, AMP/ATP-binding domain 794 1066 IPR002192 GO:0005524|GO:0016301|GO:0016310
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g397 K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] - vvi:100247690 1871.29
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g397 . . . . . Bpe14g01163 . . . . . Cma14g01661 Car06g01249 Car14g01494 . Cpe08g00228 Cpe03g01402 Bhi01g00890 . . . Hepe05g1501 . Lcy11g1476 . . . . . . . . . . . Lsi05g01477 . . Cme06g00668 . . . . . Bpe13g00635 . Bma06g01529 . . Cmo14g01705 . . . . . . . . . . . . . Cla05g00597 Cam05g0657 Cec05g0664 Cco05g0661 Clacu05g0650 Cmu05g0619 Cre05g0688 . Csa03g01393 Chy06g00636 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010599 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 32