Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g400 ATGGGGTTTGGAAAGAAGTCGGGACCACAATACACCGATTTGGACAACCCTTTTCTCCATATGACTCATCCACCTTCGCCACCTCCCCCATCTTCTCAAGTTACTGCTTCTCAGAGATCGCCAAGATGGAGTGATTATGATGCCCAAGTCTACCAGAGGCCTTCAGCAGCTCCATCACTTTTTCCTTCGCATAATTCTGAAACTAGCATTTCAGCTAGGGTTTCCAGATCCCAAGACTCCAAAAGGGCCAGATCTCCTCCTGTACCATCTATGGGTGATGAAGTTTCACGAAACTCCAAAAAATTTGTTCTTAGAAGCCATGCAGATTCTCTTAGTGAAAATCACAATCGCTTAGTTCTACAGAGAACGCGATCACCTCCCTTGGCTCATGAAAAGAATCATTCTCTTGAGGGTTTTCGCTCTCCTTTTGCAGAAGCTCAACAGTCTTCTTTATCTTCCTCTGGATGGGGTCACCGTCCTGAGGTGCCAAGCAGTTATGCTAACCTGCCAACTCATCAATCCGTTGGCTCTGTCTCACCTTATGTTGGTTCTTATGATTCTAGAAGAAGTTCTCCAACTAAGATTACTGATGCTCAAGTCCCCAAAAGAACCAGGTCCCCACCAATACTTCCTGCAAATGAAGTTTTCCAGGGAAATATTCATCTTGCTCAAAATAACTCTAAAAGGCCTTCTATATCTCCTCCGAGGTTCGGTGGGTCAAGTGTTCATGCTCCTCCTGCTTCTCAAATACTTAAGAAGTCCCCACCATCTATGCTCAGTATTGATGCTGAAGCTGCTGCAACCAAGCCCACTAGCATCTCACGGACAAGGTCACCCCCTTTGCATTCCAATGATCATGTCTTCCAGGGAAACTCTTTTTCCACTCAAGATGATACTGAACGGGAAATGCAAGCAAAGGCAAAGCGATTGGCCCGCTTCAAGGTCGAACTAGAGCAACCTGTGCAAAGCAGCTTTGATATTGCTAATCAAAAGATTTCTGCAAATAGGCATGATCTGTCGATGGTGGAGAAGCAACAATTAGCTGGGGAACATTCTGTGGATGTAGCAAGGAGTTTCCCTGATGGCAATGCTTTAGCTGATCATGAAGGCTTGGAACCACCCAGTATTATTATTGGGTTATGTCCAGATATGTGTCCTGAGTCAGAAAGGGCAGAACGAGAGAGGAAAGGGGATCTTGATCAGTATGAGCGCTTGGATGGGGATAGAAACCAAACCAGCCAATATCTTGCTATTAAGAAGTATAATAGGACAGCAGAGAGAGAAGCGGTCTTGATACGTCCCATGCCGGTCCTGCAGCAGACAATTGATTATCTTCTGAATTTGCTATATGAGCCTTATGATGACAGGTTCCTTGGCATGTATAATTTCTTGTGGGATAGGATGAGAGCAATCCGGATGGACCTGAGGATGCAGCACATTTTTGACCTACAGGCTATTAGTATGCTGGAACAAATGATAAGACTTCATATAATAGCCATGCATGAATTATGTGAATACACAAAAGGAGAGGGATTTTCTGAGGGATTTGATGCACACCTCAATATTGAGCAGATGAACAAAACTTCAGTTGAATTATTCCAAATGTATGATGATCATAGAAAGAAGGGAATAATTGTGCCAACAGAAAAAGAGTTCCGTGGCTATTATGCACTTCTTAAGCTGGACAAGCACCCTGGGTACAAAGTTGAACCTGCTGAGCTCTCACTGGATCTTGCAAAGATGACTCCAGAGATGAGACAAACCCCAGAGGTGGTATTTGCCCGAGATGTAGCAAGAGCTTGCAGAACAAGTAATTTCATTGCTTTCTTTCGGCTTGGGAAGAAAGCAAGTTATCTTCAAGCATGCCTAATGCATGCTCACTTTGCTAAGTTACGAACACAGGCACTTGCTTCTCTACACTGTGGCCTACAGAATAACCAAGGTCTCCCTGTTGCCCATGTTGCCAGGTGGCTTGGGATGGAGGAAGAAGACATAGAAAGCCTTATAGAGTATCATGGGTTCTTGATAAAGGAATTTGAAGAGCCTTATATGGTGAAGGAAGGCCCATTTCTTAATGCTGATAAGGACTATCTCACCAAATGTTCAGAACTTGTCCATTCAAAAAAGTCAAATACTATAGTTGAGGATGTTGCATCTTCTTGTCAATCAATGTCCTTGCCTTCTGCAAAAGCAACAGAGCTTCAGTTGAGTAAGGACTACAATCATGAGCCAATAGCCACTGCACCTGTCGGCAAAAATGATTATGACCCTGCAATGGATGAAGAAATGGCTGATTTTGAAGCTGTTTCATCCCCAAAAGATGGCACGCCAATCCAGCTGATGCTTGGGCCATCAACAGTTTCCCAGCAGAGTGCAGATGGCCATTGGGTGGCAAGTGTTAGTTCAATGGCATGTGATTTCGCCTTAGCTCAGAAGTCCCCTGAATCTCAGCCAACTAAAGTTGGAAAAGTGGGGCAACCAAATTTTGATGCACTCTTCAGAAACTCTCTGGAGAAAAGAAGACAGTCTCACATGGAAGCAATGCCATCACAGGTTGTGTCAACACCAGTTATGCAAGAGAGATTCCCTGTTACTGAATTTAATTATCCTGTGGAAAATTCAGTACCACAAACTGTGGTAATTAAAGATATAGAAGATGAAGAACTTACTGACATTCACCAAGAAGTTGAAAATGATGTTGTGGCAAGTAGTCAGGTTGAAGAAGTCGCGGAAGCTAAACTCAAATTGATCTTAAGAATATGGAGGCGACGTTCTTCAAAGCGAAGGGAGTTGCGTGAACAGAGGCAATTAGCAGCAAGTGCTGCACTAGATTTGCTATCACTGGGCCCACCAATTCAACATAATGAAGATCAACCAAGCACTTTCAGTGAGTTCAATATTGACCAAATTATGAGGGAGAGATACCAAAAACATGAACAATCCTGGTCCAGGCTGAATGTTTCAGAAGTGGTAGCAGATAAATTGAGTGGAAGAAATCCTGACTCTAAATGTTTGTGCTGGAAAATTATTGTATGTTCCCAGATGAACAACCCAGGAGGAGAAAACATGGGCCATAGGAGCCAAGTTGCCCATTTTGCAGCAGGTACGTGGTTGCTTTCTAAGCTTCTGCCTACCAGAAAAGATGACGATGCTGGTCTAGTAATTTCATTACCTGGCCTGTCTATGTGGGAGAAATGGATGCCTAGCCAATCTGATGCTGATATGACCTGCTGTTTGTCCATTGTTGTGGAAGCAAAATTTGATAATCTAAACCAGACAGCACTTGGTGCAAGTGCAGTTCTTTTCCTTGTATCTGAAAGCATCCCATTGGAGCTTCAAAAGGTCCGACTCCATAACCTTCTGATGTCTTTACCTTCTGGTTCATGCTTGCCACTGCTGATCTTAAGTGGCACATACAAAAAGGACGCTTCAGATCCTTCCTCTGCCATAATTGATGAATTGGGGCTCAACAGCATTGATAGGTCACGTGTAAGTCGCTTTTCACAATTAAGAAAGGGGCTGTATTGGTTGGCTAGTGAATCACCCCTACAGCCCATTCTTCACTGTGTCAAAACACGTGAACTGGTTCTGACCCACCTTAATTGTTCTTTGGAGCCATTAAGTTGTACTTGCCAAGCATAA 3642 43.6 MGFGKKSGPQYTDLDNPFLHMTHPPSPPPPSSQVTASQRSPRWSDYDAQVYQRPSAAPSLFPSHNSETSISARVSRSQDSKRARSPPVPSMGDEVSRNSKKFVLRSHADSLSENHNRLVLQRTRSPPLAHEKNHSLEGFRSPFAEAQQSSLSSSGWGHRPEVPSSYANLPTHQSVGSVSPYVGSYDSRRSSPTKITDAQVPKRTRSPPILPANEVFQGNIHLAQNNSKRPSISPPRFGGSSVHAPPASQILKKSPPSMLSIDAEAAATKPTSISRTRSPPLHSNDHVFQGNSFSTQDDTEREMQAKAKRLARFKVELEQPVQSSFDIANQKISANRHDLSMVEKQQLAGEHSVDVARSFPDGNALADHEGLEPPSIIIGLCPDMCPESERAERERKGDLDQYERLDGDRNQTSQYLAIKKYNRTAEREAVLIRPMPVLQQTIDYLLNLLYEPYDDRFLGMYNFLWDRMRAIRMDLRMQHIFDLQAISMLEQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKKGIIVPTEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEMRQTPEVVFARDVARACRTSNFIAFFRLGKKASYLQACLMHAHFAKLRTQALASLHCGLQNNQGLPVAHVARWLGMEEEDIESLIEYHGFLIKEFEEPYMVKEGPFLNADKDYLTKCSELVHSKKSNTIVEDVASSCQSMSLPSAKATELQLSKDYNHEPIATAPVGKNDYDPAMDEEMADFEAVSSPKDGTPIQLMLGPSTVSQQSADGHWVASVSSMACDFALAQKSPESQPTKVGKVGQPNFDALFRNSLEKRRQSHMEAMPSQVVSTPVMQERFPVTEFNYPVENSVPQTVVIKDIEDEELTDIHQEVENDVVASSQVEEVAEAKLKLILRIWRRRSSKRRELREQRQLAASAALDLLSLGPPIQHNEDQPSTFSEFNIDQIMRERYQKHEQSWSRLNVSEVVADKLSGRNPDSKCLCWKIIVCSQMNNPGGENMGHRSQVAHFAAGTWLLSKLLPTRKDDDAGLVISLPGLSMWEKWMPSQSDADMTCCLSIVVEAKFDNLNQTALGASAVLFLVSESIPLELQKVRLHNLLMSLPSGSCLPLLILSGTYKKDASDPSSAIIDELGLNSIDRSRVSRFSQLRKGLYWLASESPLQPILHCVKTRELVLTHLNCSLEPLSCTCQA* 1214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4036865 4054035 + Vvi5g400 Vvi5g400 786542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g400 1213 Gene3D - 428 730 - -
Vvi5g400 1213 MobiDBLite consensus disorder prediction 267 298 - -
Vvi5g400 1213 MobiDBLite consensus disorder prediction 56 84 - -
Vvi5g400 1213 MobiDBLite consensus disorder prediction 225 301 - -
Vvi5g400 1213 MobiDBLite consensus disorder prediction 146 209 - -
Vvi5g400 1213 MobiDBLite consensus disorder prediction 1 133 - -
Vvi5g400 1213 PANTHER 80 KDA MCM3-ASSOCIATED PROTEIN 149 1207 IPR045107 -
Vvi5g400 1213 MobiDBLite consensus disorder prediction 98 112 - -
Vvi5g400 1213 Pfam SAC3/GANP family 384 677 IPR005062 -
Vvi5g400 1213 MobiDBLite consensus disorder prediction 166 200 - -
Vvi5g400 1213 ProSiteProfiles PCI domain profile. 521 709 IPR000717 -
Vvi5g400 1213 PANTHER SAC3 FAMILY PROTEIN B 149 1207 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g400 K23719 SAC3; nuclear mRNA export protein SAC3 - vvi:100266559 2338.15
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g400 . . . . . . . . . . . Cma14g01664 . Car14g01497 Sed02g1285 . Cpe03g01404 Bhi01g00884 Tan10g0912 Cmetu10g1725 . Hepe05g1504 . Lcy11g1479 . . . . . . . . . Cone7ag0196 Cone4ag0189 Lsi05g01473 . . Cme06g00665 Blo02g00561 . . . . . . . . . Cmo14g01708 . . . . . . . . . . . . . Cla05g00594 Cam05g0654 Cec05g0662 Cco05g0658 Clacu05g0647 Cmu05g0616 Cre05g0684 . Csa03g01390 Chy06g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009906 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 33