Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g401 ATGAGTGGTACAACGGCGATTACGGTCCTTCTTATTGGGAATACCCTTTTTGTTGCAAATGTGGGTGATTCAAGGGCTGTGATTGCAGTTAAGGAGGGGAATCGAATTATTGCAGAAGATCTGTCTTATGATCAGACACCATTTAGAAAAGATGAATATGATAGAGTGAAGCTTTGTGGGGCCAGGGTTCTGAGTGTGGATCAAGTGGAAGGGCTTAAGGACCCAGATATTCAAACATGGGGTGATGAAGAAACTGAAGGAAGCGATCCTCCAAGGTTGTGGGTACAGAATGGTATGTACCCTGGGACTGCATTTACAAGGAGTGTAGGAGATGGTACAGCTGAGAAAATTGGTGTGATTGCTGTTCCTGAGGTGTCAATGATTGAGCTTGCATCCAATCATCTGTTTTTTGTTGTTGCAAGTGATGGGGTTTTTGAGTTTCTCTCCAGCCAGACCGTTGTCGAGATGGTGGCAAGATATCCAGATCCTAGAGATGCATGTGCAGCCATTGCTGGAGAATCATACAAACTATGGTTGGAGCATGAAAATCGAACTGATGATATAACAATCATCATTGTACACATTAGAGACCTATCTGATTCAGGTGCCAATACCATGGCTATCTTGAGGACAGGAAGAGGAGGAACTCCTGATGTATCCATTACTACTGGGTCAGAAGTTTTTCATTCAACGGTAAGTGAATTCTCAGATATGCAGCTTTGTTAG 726 43.25 MSGTTAITVLLIGNTLFVANVGDSRAVIAVKEGNRIIAEDLSYDQTPFRKDEYDRVKLCGARVLSVDQVEGLKDPDIQTWGDEETEGSDPPRLWVQNGMYPGTAFTRSVGDGTAEKIGVIAVPEVSMIELASNHLFFVVASDGVFEFLSSQTVVEMVARYPDPRDACAAIAGESYKLWLEHENRTDDITIIIVHIRDLSDSGANTMAILRTGRGGTPDVSITTGSEVFHSTVSEFSDMQLC* 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4056168 4060179 - Vvi5g401 Vvi5g401 786543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g401 241 CDD PP2Cc 2 195 IPR001932 -
Vvi5g401 241 SUPERFAMILY PP2C-like 2 197 IPR036457 -
Vvi5g401 241 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 1 228 - -
Vvi5g401 241 ProSiteProfiles PPM-type phosphatase domain profile. 1 195 IPR001932 -
Vvi5g401 241 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 1 228 - -
Vvi5g401 241 SMART PP2C_4 1 193 IPR001932 -
Vvi5g401 241 Gene3D - 1 197 IPR036457 -
Vvi5g401 241 Pfam Protein phosphatase 2C 2 164 IPR001932 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g401 - - vri:117914949 458.759