Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g405 ATGAAAGGCCACGATCTAATCAACTCCTATCTTCCCGATGAGCTCATCATCGAGATTTTCCGGCACATGCACTCCAAGTCTAGCCGCGACGCCTGCGCTCTCGTCTGCAAGCGCTGGCTCGCCCTCGAGCGCAACAGTCGCCGCACGCTCCGCATCGGCGCGTCCGGCAGCCCTGATTCGTTCGTCAAGCTGCTGGCGAGGCGGTTTGTCAATGTCAAGAATCTTTACGTTGACGAGAGGCTCTCAGTCTCGCATCCGGTTCAGTTGGGAAGAAGACGGGGTGGCAGCCAATCAACACTCTCTTCTCTTAACCTGCACTATATGATTGAGAGAGGTGAATCTGATGACAGTGAGTTGGAATCAAACTGTTTTTCAGATGCTGGATTGATTGCTCTTGGTGAAGCCTTTACCAAACTTAAGAAGCTGAGTTTAATATGGTGCTCTAATGTAACTAGTATGGGCTTGCAATCCTTTGCCGGGAAGTGTAGATCCTTGAGATCTTTAGATTTGCAGGGTTGCTATGTTGGAGATCAAGGTCTAGCTGCTGTTGGGGAGTGTTGCAAGGAACTTCAAGATTTGAATTTGCGTTTTTGTGAAGGCTTGACGGACAAGGGTTTGGTTGAATTAGCAATTGGTTGTGGGAAATCACTGAAAGTTCTTGGTATTGCAGCTTGTGCAAAAATAACTGATATCTCATTGGAAGCAGTGGGGTCTCACTGCAGATCTCTTGAGACGTTGTCATTGGATTCAGAATTCATACACAATGAAGGGGTGCTTGCTGTGGCGGAAGGTTGCCGTCTTTTGAAAGTTCTGAAACTACTATGCATTAATGTGACAGACGAAGCTTTGGAAGCTGTTGGCACCTGTTGTTTATCACTGGAAGTGTTGGCTCTGTACAGCTTCCAGAAATTCACCGACAGGAGTCTATCAGCTATTGGAAAAGGGTGTAAGAAGTTAAAGAATCTTATTCTAAGTGACTGTTATTTCTTGAGTGACAAGGGTTTGGAGGCAATTGCAACTGGTTGTTCTGAACTTATACATCTTGAAGTTAATGGATGTCACAATATTGGAACACTTGGACTAGCGTCTGTTGGAAAATCTTGCTTGCGCCTGACTGAGTTAGCTCTGCTGTATTGCCAAAGAATCGGTGATAATGCACTTCTTGAAATAGGCAGGGGCTGCAAATTCTTGCAAGCTCTTCACTTGGTGGATTGTTCGAGTATTGGAGACGATGCCATATGTGGTATAGCTAATGGCTGCAGAAACTTGAAAAAACTTCACATTCGCCGCTGTTATGAGATTGGGAATAAGGGAATTGTAGCTGTTGGTGAGAATTGTAAATCACTCAAAGATCTTAGCCTTCGATTTTGTGATAGGGTTGGAGATGATGCCCTTATTGCTATTGGTCAGGGTTGCTCCCTAAATCATCTAAATGTCAGTGGTTGTCACCAAATTGGTGATGCTGGAATAATAGCCATTGCAAGAGGCTGCCCAGAACTCAGTTACCTAGATGTAAGCGTTCTTCAGAATTTGGGAGACATGGCAATGGCCGAGATAGGAGAAGGTTGCCCATCACTGAAGGACATAGTGCTATCACACTGTCGTCAAATAACCGACGTGGGACTAGCCCATCTTGTAAAAAAATGCACCATGCTTGAGACCTGCCACATGGTTTATTGCCCAGGCATAACCACAGCCGGAGTTGCCACCGTCGTCTCAACCTGCCCGAACATAAAGAAGGTCCTGGTCGAGAAGTCGAAAGTGAGCGAGAGAACTAGACGAAGGGCAGGCTCAGTCATCTCCTACATATGTGTGGACCTTTCAATCCCGCACTGA 1836 46.08 MKGHDLINSYLPDELIIEIFRHMHSKSSRDACALVCKRWLALERNSRRTLRIGASGSPDSFVKLLARRFVNVKNLYVDERLSVSHPVQLGRRRGGSQSTLSSLNLHYMIERGESDDSELESNCFSDAGLIALGEAFTKLKKLSLIWCSNVTSMGLQSFAGKCRSLRSLDLQGCYVGDQGLAAVGECCKELQDLNLRFCEGLTDKGLVELAIGCGKSLKVLGIAACAKITDISLEAVGSHCRSLETLSLDSEFIHNEGVLAVAEGCRLLKVLKLLCINVTDEALEAVGTCCLSLEVLALYSFQKFTDRSLSAIGKGCKKLKNLILSDCYFLSDKGLEAIATGCSELIHLEVNGCHNIGTLGLASVGKSCLRLTELALLYCQRIGDNALLEIGRGCKFLQALHLVDCSSIGDDAICGIANGCRNLKKLHIRRCYEIGNKGIVAVGENCKSLKDLSLRFCDRVGDDALIAIGQGCSLNHLNVSGCHQIGDAGIIAIARGCPELSYLDVSVLQNLGDMAMAEIGEGCPSLKDIVLSHCRQITDVGLAHLVKKCTMLETCHMVYCPGITTAGVATVVSTCPNIKKVLVEKSKVSERTRRRAGSVISYICVDLSIPH* 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4088415 4095100 - Vvi5g405 Vvi5g405 786547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g405 611 Pfam Leucine Rich repeat 472 494 IPR001611 GO:0005515
Vvi5g405 611 Pfam Leucine Rich repeat 523 545 IPR001611 GO:0005515
Vvi5g405 611 Pfam Leucine Rich repeat 446 468 IPR001611 GO:0005515
Vvi5g405 611 Pfam Leucine Rich repeat 161 182 IPR001611 GO:0005515
Vvi5g405 611 Pfam Leucine Rich repeat 420 441 IPR001611 GO:0005515
Vvi5g405 611 Pfam Leucine Rich repeat 190 210 IPR001611 GO:0005515
Vvi5g405 611 Pfam Leucine Rich repeat 316 339 IPR001611 GO:0005515
Vvi5g405 611 PANTHER F-BOX/LRR-REPEAT PROTEIN 4 485 585 - -
Vvi5g405 611 PANTHER F-BOX/LRR-REPEAT PROTEIN 4 12 398 - -
Vvi5g405 611 PANTHER F-BOX/LRR-REPEAT PROTEIN 4 390 488 - -
Vvi5g405 611 Gene3D Ribonuclease Inhibitor 154 354 IPR032675 -
Vvi5g405 611 SUPERFAMILY RNI-like 268 580 - -
Vvi5g405 611 SUPERFAMILY F-box domain 9 47 IPR036047 GO:0005515
Vvi5g405 611 Gene3D Ribonuclease Inhibitor 355 608 IPR032675 -
Vvi5g405 611 SUPERFAMILY L domain-like 119 301 - -
Vvi5g405 611 Gene3D - 6 47 - -
Vvi5g405 611 SMART LRR_CC_2 523 548 IPR006553 -
Vvi5g405 611 SMART LRR_CC_2 162 186 IPR006553 -
Vvi5g405 611 SMART LRR_CC_2 214 239 IPR006553 -
Vvi5g405 611 SMART LRR_CC_2 342 367 IPR006553 -
Vvi5g405 611 SMART LRR_CC_2 136 161 IPR006553 -
Vvi5g405 611 SMART LRR_CC_2 265 289 IPR006553 -
Vvi5g405 611 SMART LRR_CC_2 290 315 IPR006553 -
Vvi5g405 611 SMART LRR_CC_2 497 522 IPR006553 -
Vvi5g405 611 SMART LRR_CC_2 472 496 IPR006553 -
Vvi5g405 611 SMART LRR_CC_2 549 574 IPR006553 -
Vvi5g405 611 SMART LRR_CC_2 420 445 IPR006553 -
Vvi5g405 611 SMART LRR_CC_2 240 264 IPR006553 -
Vvi5g405 611 SMART LRR_CC_2 368 393 IPR006553 -
Vvi5g405 611 SMART LRR_CC_2 187 212 IPR006553 -
Vvi5g405 611 SMART LRR_CC_2 316 341 IPR006553 -
Vvi5g405 611 SMART LRR_CC_2 446 471 IPR006553 -
Vvi5g405 611 SMART LRR_CC_2 394 419 IPR006553 -
Vvi5g405 611 Pfam F-box-like 9 40 IPR001810 GO:0005515
Vvi5g405 611 PANTHER UNCHARACTERIZED 390 488 - -
Vvi5g405 611 PANTHER UNCHARACTERIZED 485 585 - -
Vvi5g405 611 PANTHER UNCHARACTERIZED 12 398 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g405 K10268 FBXL2_20; F-box and leucine-rich repeat protein 2/20 - vvi:100254543 1209.9
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g405 . . Bda03g01248 . . Bpe14g01357 . . Cmo08g01154 Cmo17g00271 . . . . . . . . . . . . . . Cla06g00531 Cam06g0572 Cec06g0570 Cco06g0578 Clacu06g0560 Cmu06g0554 Cre06g1322 . Cone15ag0808 . . . . Chy11g01444 . . . . . . . . . Sed06g0516 . . Cma08g01183 . Car08g01059 Car17g00259 Cpe12g00236 Cpe17g00113 Bhi12g01780 Tan06g2588 Cmetu07g1857 Lac12g2348 . . . . . . . . . . . . . Cme11g01949
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010433 1 1 0 1 1 1 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 2 1 32