Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g409 ATGCATTCTCACCTTCATTGGGTGTTTTCATCTCTTCACGGTTGCCACATTTTTTATGTAACGGGTTTAAGCTCCTTGTTGCAATATATTTTTACTGCCACATATTATTCTTTTCTTGTAAAAACGCAGACCTCCATGGCTAGACCTTCATCCTCTTCCTCCGTTATCAGCTTCCTTCGCCAAAACCCTAACTCTAGAATTCGGAATCTGGGCGTGGTGAGTGGGAATCAATATGGCGATGTTGAAGGAGCCCACCAACATACGCAGCAGCAACAACACTTGGAGGAGATCGTGAAGAGAGTTTCGGATATTACGCGAACCAGGCCCAGATGGGAGCAAACCCTTCTCTCTGATTTTCCCTCTTTCAATTTCTTAGACCCCACTTTTCTGTCCCATTTTGTCGAGCATCAGAAGAATGCTCTTATTTCTCTCCGTTTCTTTCACTGGCTCAGCTCTCAGTCCGGCTTTTCGCCTGATTCTTCTTCTTGTAATGTGCTGTTTGATGCTCTTGTTGAAGCTGGTGCTTGCAATGCTGCGAAGTCGTTTCTCGATTCTACCAATTTTAACCCCAAACCGGCTTCTCTGGAGGCTTATATTCGATGCCTTTGTAAAGGTGGATTAGTGGAGGAAGCAATCAGTGTGTTTGGCCAGCTGAAGGGAATTGGAGTTTGTGCCTCGATAGCGACGTGGAATTCGGTTTTGAGGGGTTCGGTCAGGGCTGGCCGGATTGATTTTGTTTGGGAGTTGTATGGGGAGATGGTAGAGTCTAGTGTTGTAGCGGATGTGCACACTGTTGGGTATCTGGTTCAAGCTTTTTGTGATGAAAATAGGATTTCAGATGGTCATAACCTTCTTCGGCGAGTTTTGGAAGATGGGGTAGTGCCTAGAAATGCTGCTTTCAACAAATTGATATCAGGATTTTGCAAGGATAAAGCTTATGGTAGAGTGAGTGATCTGCTTCATAGTATGATTGCCAGGAACCGGGCACCTGATATTTTTACTTATCAGGAAGTAGTCAATGGCCTTTGCAAGGGAGGAAAGGGGCCTGAAGGTTTTCGGGTTTTCAAAGATCTCAAGGATAGAGGGTATGCTCCTGACAGGGTGATGTATACGACAATGATTCATGGTCTTTGCCGAATGAAATGGCTTGGGGATGCTAGGAAGCTGTGGTTTGAGATGATTCAGAAGGGATTTCTTCCGAATGAGTACACTTATAATGCTATGATTCACGGCTATTTTAAAATTGGCAATCTTGAAGAAGCTTGGAAGATGTACAGAGAAATGTGTGATAAAGGTTATGGAGAGAAAACAGTGAGTTACAATGTGATGATTAAAGGGTTGTGTTCACATGGAAAGATAAAAGAAGCTCATGACTTGTTTGAAGAAATGTCCCATAAGGGTATTCTACGCAATCACATCACATACAATGCTCTAGTTAGGGGATTTTGCAAGGAAGGGAAGATAGTTGAAGGTGCAAACCTTCTTTATGAACTTCTGGATCAGGGAATACAGCCGTCAGCTGCCTCTTATGCCCCACTTATTGATAAACTTTGCCAGGAAGGAGACATGCAGAATGCAAAAATTTTGTGGGATGATATGCAAAATAGGGGTATGGAACCGGCTGTGTGTACTCATGATTTTATGATAACTGGATTCTGCAAGCAAGGATGTGCTATGGAAGGGATGGAATGGTTGACCACCATGCTGAGGAGTAAGCTCAGACCACAAAAGAAGTCTTTTGAGAGTCTGATTCAATGCCTTTCACAAATAGATAGGTTGGATGATGCTTTACTTGTTTTAGATTCCATGTTAAAAATAGGTTTCAGACTCAGCATAAGTATCTGCAATTCTTTGGTTACCAAACTTTGCGAAAAGAATTCCCTTCCTATATTAAAAATAGTAAATGACTAA 1911 42.49 MHSHLHWVFSSLHGCHIFYVTGLSSLLQYIFTATYYSFLVKTQTSMARPSSSSSVISFLRQNPNSRIRNLGVVSGNQYGDVEGAHQHTQQQQHLEEIVKRVSDITRTRPRWEQTLLSDFPSFNFLDPTFLSHFVEHQKNALISLRFFHWLSSQSGFSPDSSSCNVLFDALVEAGACNAAKSFLDSTNFNPKPASLEAYIRCLCKGGLVEEAISVFGQLKGIGVCASIATWNSVLRGSVRAGRIDFVWELYGEMVESSVVADVHTVGYLVQAFCDENRISDGHNLLRRVLEDGVVPRNAAFNKLISGFCKDKAYGRVSDLLHSMIARNRAPDIFTYQEVVNGLCKGGKGPEGFRVFKDLKDRGYAPDRVMYTTMIHGLCRMKWLGDARKLWFEMIQKGFLPNEYTYNAMIHGYFKIGNLEEAWKMYREMCDKGYGEKTVSYNVMIKGLCSHGKIKEAHDLFEEMSHKGILRNHITYNALVRGFCKEGKIVEGANLLYELLDQGIQPSAASYAPLIDKLCQEGDMQNAKILWDDMQNRGMEPAVCTHDFMITGFCKQGCAMEGMEWLTTMLRSKLRPQKKSFESLIQCLSQIDRLDDALLVLDSMLKIGFRLSISICNSLVTKLCEKNSLPILKIVND* 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4117625 4127404 - Vvi5g409 Vvi5g409 786551

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g409 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Vvi5g409 636 Pfam PPR repeat family 437 484 IPR002885 -
Vvi5g409 636 Pfam PPR repeat family 226 273 IPR002885 -
Vvi5g409 636 Pfam PPR repeat family 298 344 IPR002885 -
Vvi5g409 636 Pfam PPR repeat family 505 554 IPR002885 -
Vvi5g409 636 Pfam PPR repeat family 365 411 IPR002885 -
Vvi5g409 636 Gene3D Tetratricopeptide repeat domain 382 501 IPR011990 GO:0005515
Vvi5g409 636 TIGRFAM PPR: pentatricopeptide repeat domain 368 402 IPR002885 -
Vvi5g409 636 TIGRFAM PPR: pentatricopeptide repeat domain 473 506 IPR002885 -
Vvi5g409 636 TIGRFAM PPR: pentatricopeptide repeat domain 229 261 IPR002885 -
Vvi5g409 636 TIGRFAM PPR: pentatricopeptide repeat domain 438 471 IPR002885 -
Vvi5g409 636 TIGRFAM PPR: pentatricopeptide repeat domain 333 366 IPR002885 -
Vvi5g409 636 TIGRFAM PPR: pentatricopeptide repeat domain 509 540 IPR002885 -
Vvi5g409 636 TIGRFAM PPR: pentatricopeptide repeat domain 403 432 IPR002885 -
Vvi5g409 636 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 46 628 - -
Vvi5g409 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Vvi5g409 636 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 46 628 - -
Vvi5g409 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Vvi5g409 636 Pfam PPR repeat 199 223 IPR002885 -
Vvi5g409 636 Pfam PPR repeat 580 608 IPR002885 -
Vvi5g409 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Vvi5g409 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Vvi5g409 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Vvi5g409 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Vvi5g409 636 SUPERFAMILY HCP-like 384 511 - -
Vvi5g409 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Vvi5g409 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Vvi5g409 636 Gene3D Tetratricopeptide repeat domain 94 255 IPR011990 GO:0005515
Vvi5g409 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Vvi5g409 636 Gene3D Tetratricopeptide repeat domain 513 630 IPR011990 GO:0005515
Vvi5g409 636 Gene3D Tetratricopeptide repeat domain 273 381 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g409 - - - vvi:104879243 1179.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g409 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0807 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010261 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 30