Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g41 ATGGCACATGCTCACCGGAGTCAGAACAGTGTTGCTCTGGTTCATTCACAGCCGTTGATACATCCTCAACCTCCAGTCGTGAACGCTCCGGTCGGCTTTGTTCCGAGACCGGTCGGCGTGATAAACCCTAGCTTCGGTCCTGTGCCGCCTTTTGATCCCGCGAGTTTACCGCAACCTGGATTTGTTTTGAATCCGGCGGTGTTGGTCCGAATGGAACATCGCAGGTCAATCTCGCTGCTTCAGTTTATGTCAAACGAAGGGCTCATTCCGTCCCCAGAGGAGGAGTTGAAGAGGAAAAATGTAATTGAGAAGCTCAAAGAGATAGTGTTGACATGGGTTAAGAGGGTTGCTTGGCAACGTCAACGCCCAAAACAACAAATTGCAGTTACTTCTGCAACGATTTTAACTTATGGCTCGTATGGCCTTGGAGTTCATGGGCCAGAATCAGACATTGATGCTCTATGTGTTGGCCCTTTCTTTGCTTCCATGGCTGATGATTTTTTTATTGTTCTGCGCAACATGCTTGAAAGTAGACCAGAAGTCTCAGAGATCCATTGTGTCAAAGATGCCAAAGTTCCTCTAATGCGGTTCAAATTTGATGGAATATCCGTTGATCTTCCATATGCTCAGCTTAAACTATTATATGTTCCTGAAAATTTGAATGTACTCAACCCATATTTTCTAAGGAATATCGACGAAACAAGTTGGAAAAGCTTGTCCGGAGTACGAGCCAATGAATGCATTCTTCAGCTTGTTCCAAATGTGGAGAATTTTCAATCAATACTTCGATGTATTAAATTATGGGCGAAAAGGCGAGGGGTGTATGGTAACTTATTTGGGTATTTTGGTGGAGTCCATTTGGCCATTCTTGCTGCTTTTGTTTGTCAAAAGAATCCACATGCCAACTTAAATGTTCTAATGTCAAGCTTTTTTAAGACTTTCTCCGGCTGGCCTTGGCCTACACCAGTAGCATTGGAAGATGGAAGACTACCAACTGGAGGCACCAGAGAAACACGTGCATTAATGCCCATTCAATTACCATGTAGCCCTTATGGATATTGCCATTCAAACATCACGAAAAGCACATTTTACAGGATCACGACAGAGCTTACCCTAGGGCATGCTCTGACTCGGGATCTCCTAAGGCTAGACTTTGACTGGAATGACATATTTGAGCCTTTTTGTTACTCCAAGAAATATTCGCGATTTATAAAAATTTACCTGTCGTCTTCTAATCAAGATGAATTAGGGGATTGGGTGGGTTGGGTAAAGTCACGCTTTCGCTTCCTTCTTGCAAAGGTGGAGGAGGTACAGGGTCTGTGTGACCCCAACCCAACAGAGTTCATTGATCCTGATGCAGGAGGGCCAAATGTTGTGTTTTTCTGGGGCGTACAACCTGGTAGGATAAATTTTTCGGACATAGATGTTGTGGAGGATGACTTCATGCAAAACATTAATAACGGTGGCTATCAAGGCCCTCCTGGAAAGATGAATTTGTCTGTCATTCCTACTTCTCAGCTGCCTGGTTATGCTCAGCTGGATACTGGAAGTAGGAACAGGACAAAAGCATGCTGGAGGATGTTTAATTATCATCAACCAAGGGTCCCGGTGTTCTCGCAGCATCTGCCTCTGTACTTTGTAGGGTATGCAGCAACCGATAAGGATGCTAAGCGCCTGGATGCTTGGAGCTAG 1692 44.74 MAHAHRSQNSVALVHSQPLIHPQPPVVNAPVGFVPRPVGVINPSFGPVPPFDPASLPQPGFVLNPAVLVRMEHRRSISLLQFMSNEGLIPSPEEELKRKNVIEKLKEIVLTWVKRVAWQRQRPKQQIAVTSATILTYGSYGLGVHGPESDIDALCVGPFFASMADDFFIVLRNMLESRPEVSEIHCVKDAKVPLMRFKFDGISVDLPYAQLKLLYVPENLNVLNPYFLRNIDETSWKSLSGVRANECILQLVPNVENFQSILRCIKLWAKRRGVYGNLFGYFGGVHLAILAAFVCQKNPHANLNVLMSSFFKTFSGWPWPTPVALEDGRLPTGGTRETRALMPIQLPCSPYGYCHSNITKSTFYRITTELTLGHALTRDLLRLDFDWNDIFEPFCYSKKYSRFIKIYLSSSNQDELGDWVGWVKSRFRFLLAKVEEVQGLCDPNPTEFIDPDAGGPNVVFFWGVQPGRINFSDIDVVEDDFMQNINNGGYQGPPGKMNLSVIPTSQLPGYAQLDTGSRNRTKACWRMFNYHQPRVPVFSQHLPLYFVGYAATDKDAKRLDAWS* 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 455084 464858 + Vvi5g41 Vvi5g41 786183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g41 563 PANTHER NUCLEAR POLY(A) POLYMERASE 3 61 556 - -
Vvi5g41 563 SUPERFAMILY PAP/OAS1 substrate-binding domain 253 393 - -
Vvi5g41 563 SUPERFAMILY Nucleotidyltransferase 63 249 IPR043519 -
Vvi5g41 563 Pfam Poly(A) polymerase central domain 72 393 IPR007012 GO:0004652|GO:0043631
Vvi5g41 563 Gene3D Beta Polymerase, domain 2 90 246 IPR043519 -
Vvi5g41 563 CDD NT_PAP_TUTase 97 211 - -
Vvi5g41 563 Pfam Nucleotidyltransferase domain 131 168 IPR002934 GO:0016779
Vvi5g41 563 Gene3D Poly(A) polymerase predicted RNA binding domain 396 500 - -
Vvi5g41 563 PANTHER POLY A POLYMERASE 61 556 - -
Vvi5g41 563 Gene3D - 71 391 - -
Vvi5g41 563 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 396 510 IPR011068 GO:0003723|GO:0016779|GO:0031123
Vvi5g41 563 Pfam Poly(A) polymerase predicted RNA binding domain 398 440 IPR007010 GO:0003723|GO:0043631
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g41 K14376 PAP; poly(A) polymerase [EC:2.7.7.19] - vvi:100267147 1169.84
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g41 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003713 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 5 4 4 46