Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g412 ATGGCACAGATTTTGGCACCATCTACTCAATGGCAGATGAGAATGACAAAAAACCCTGCCAATGCAAGTCCCTTTACAACAAAGATGTGGGGCTCTCTGTTCCTGAAACAAAAAACAAAAGGAACAGCAAAATTTTCTACTAAATTCAGAGTGTGTGCTTCAAAGTCTGAAAGCAGCACCGTCAACAGGCTTGATGATCTGCTGAATATGGACATCAGACCATACACGGATAAGATCATTGCTGAATACGTTTGGATTGGTGGGACTGGGATTGATCTGCGTAGCAAGTCAAGGACAATCTCCAAACCTGTGGAGCACCCATCTGAGCTTCCCAAGTGGAATTATGATGGATCGAGTACTGGACAGGCACCCGGAGAAGATAGTGAAGTGATTTTATACCCTCAAGCAATCTTTAAGGACCCTTTTCGTGGTGGTAACAACATCTTGGTAATTTGTGATTCATACACACCAGCAGGTGAGCCCATCCCTACAAACAAGCGCCACAGGGCTGCTGAGATCTTTGGTAACAAGAAAGTCATAGACGAAGTTCCATGGTTTGGAATAGAGCAAGAGTACACTTTGCTTCAACCAAATGTGAAGTGGCCTTTGGGCTGGCCTGTAGGTGCCTATCCTGGTCCTCAGGGTCCTTATTACTGTGCTGCTGGGGCTGACAAGTCATTTGGCCGTGACATCTCAGATGCTCACTACAAGGCTTGTTTATATGCGGGAATTAACATTAGTGGCACCAATGGGGAAGTTATGCCAGGCCAGTGGGAATATCAAGTTGGTCCTAGTGTTGGTATTGAAGCTGGGGATCATATCTGGTGTTCTAGATACATTCTTGAGAGGATTACTGAACAAGCTGGTGTTGTCCTCACACTTGATCCAAAGCCGATAGAGGGGGATTGGAATGGTGCAGGATGCCATACCAATTACAGTACAAAGAGCATGAGAGAAGATGGAGGCTATGAACTGATAAAGAAGGCAATTCTGAATCTGTCACTTCGCCACAAAGAACATATCAGTGCCTATGGAGAAGGAAATGAGAGAAGATTGACAGGAAAGCATGAAACAGCAAACATCAACACATTTTCCTGGGGAGTGGCTAACCGTGGTTGTTCAGTTCGTGTGGGGCGTGACACTGAGAAGCAAGGCAAAGGTTATTTGGAAGATCGCCGTCCAGCTTCAAACATGGATCCTTACATTGTGACCTCGTTACTAGCAGAAACTACAATACTATGGGAGCCAACACTAGAGGCTGAAGCTCTTGCAGCTCAGAAGCTGGCATTGAAGGTCTAA 1299 45.5 MAQILAPSTQWQMRMTKNPANASPFTTKMWGSLFLKQKTKGTAKFSTKFRVCASKSESSTVNRLDDLLNMDIRPYTDKIIAEYVWIGGTGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDSYTPAGEPIPTNKRHRAAEIFGNKKVIDEVPWFGIEQEYTLLQPNVKWPLGWPVGAYPGPQGPYYCAAGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWCSRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGYELIKKAILNLSLRHKEHISAYGEGNERRLTGKHETANINTFSWGVANRGCSVRVGRDTEKQGKGYLEDRRPASNMDPYIVTSLLAETTILWEPTLEAEALAAQKLALKV* 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4134798 4139324 - Vvi5g412 Vvi5g412 786554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g412 432 ProSiteProfiles Glutamine synthetase (GS) beta-grasp domain profile. 79 159 IPR008147 GO:0004356|GO:0006542|GO:0006807
Vvi5g412 432 Pfam Glutamine synthetase, beta-Grasp domain 85 157 IPR008147 GO:0004356|GO:0006542|GO:0006807
Vvi5g412 432 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 163 432 IPR008146 GO:0004356|GO:0006807
Vvi5g412 432 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 164 416 - -
Vvi5g412 432 Gene3D - 61 163 IPR036651 GO:0004356|GO:0006542|GO:0006807
Vvi5g412 432 SMART Gln_synt_C_2 163 411 IPR008146 GO:0004356|GO:0006807
Vvi5g412 432 Coils Coil 432 432 - -
Vvi5g412 432 PANTHER GLUTAMINE SYNTHETASE 61 415 - -
Vvi5g412 432 SUPERFAMILY Glutamine synthetase/guanido kinase 164 413 IPR014746 GO:0003824
Vvi5g412 432 Pfam Glutamine synthetase, catalytic domain 186 405 IPR008146 GO:0004356|GO:0006807
Vvi5g412 432 ProSitePatterns Glutamine synthetase signature 1. 115 132 IPR027302 -
Vvi5g412 432 ProSitePatterns Glutamine synthetase putative ATP-binding region signature. 297 313 IPR027303 -
Vvi5g412 432 SUPERFAMILY Glutamine synthetase, N-terminal domain 78 162 IPR036651 GO:0004356|GO:0006542|GO:0006807
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g412 K01915 glnA, GLUL; glutamine synthetase [EC:6.3.1.2] - vvi:100261413 874.389
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g412 Vvi7g156 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g412 . . Bda03g01264 . . . Bma04g01174 . . . . Cma14g01668 Car06g01245 Car14g01502 Sed02g1281 Cpe08g00232 Cpe03g01408 Bhi01g00873 Tan10g0907 Cmetu06g1518 . . . . . . . . . . . . . Cone7ag0205 Cone4ag0196 Lsi05g01467 . . Cme06g00659 . . . Bda13g00143 . . . . . Cmo06g01445 Cmo14g01714 . . . . . . . . . . . . . . . . . . . . . Csa03g01384 Chy06g00627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000333 5 5 3 4 4 4 2 4 4 4 4 4 7 3 4 8 4 8 7 4 4 4 2 4 4 3 4 9 5 5 136