Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g413 ATGGAACAGCTCGTCAACTTTATTATTCGTCCTCCCAGAGCGGAATATGATCCAAAAAATGATTTGTTGGATCAAGAGTTCATGCTAAAAGGGAAATGGTTTCAAAGGAAGGATCTGGAGGTTGTAAACAGTAGGGGAGATGTTCTTCAGTGTAGTCATTATGTGCCTATTGTTAGTCCTGATGGAAAGCCTCTGCCATGTGTGATATACTGCCATGGAAACAGTGGCTGCAGGGCAGATGCCAGTGAAGCTGCTATAATTTTGCTGCCTTCAAATATTACGGTTTTCACCCTTGATTTCTCAGGATCTGGCCTTTCTGGAGGGGAGCATGTTACTCTGGGGTGGCATGAAAAGGATGATCTGAAGGCAGTGGTTGATCATCTGCGGGCAGATGGGAATGTCTCCTTGATTGGTTTGTGGGGCCGCTCAATGGGTGCTGTGACTAGCCTCATGTATGGAGCTGAGGATCCTTCAATTGCAGGAATGGTTCTTGACAGTCCCTTCTCTGATTTGGTTGACTTGATGATGGAACTTGTGGATACCTACAAGTTCCGTCTACCCAAATTCACTGTGAAATTTGCAATCCAGTACATGCGAAAAGCTATCCAGAAAAAAGCAAAGTTTGACATAACAGATCTGAACACCATCAAGGTAGCAAAGTCTTGCTTTGTTCCAGTTTTACTAGGCCATGCCATTGATGACGACTTTATACTGCCTCATCATGCAGATCGTATATTCGAAGCTTATGTGGGAGACAAGAATATAATCAAATTTGAGGGAGATCACAACTCTCCACGCCCACAATTCTATTTTGATTCTATAAATATCTTTTTCCACAATGTTTTGCAACCTCCAGAGGATGAGGTGGGAGGAACATTTTTTGACACAATGTACGACTACTTTGGCAAGGGTAGTTGGACTACTGTGCCTGAAGTAGGACATGCAGACCATGGTTCATCAAGTGCATCTAAAGTTTCAGCACCAGCAACAAGCAGCACAGAAGACGTCATTAAACAACTCCGTTCCAAAAGACCCATGAGTCGGATGGAGGTTCCCTCTGATATTCCATGTAAAGATAAGCAGGCCGAAGCAGAGGAAGAAGGAAGCGAAAAAGATGGTTACTCGTCATCTTCTGGAATGATTAGCTTTGAATTATCCAATGGTCATCCCTATGGGCCTCATGTTCCAACAACAATAGACGATGATCAGTATGTAGAGTACCCATTGGATAACTTGGCAGATTTCCCATCCAATGTAGAGGAAGAAGAAAGGATGTTCATGGAAGCGGTGATTGAATCATTAAAGGAGTTGGAGACGAGACACCCTCATGCAGAAGATCAACCACCCAATGTTGGCACTGCTTTGCCTGAATCTTCAAAAAAAGACAACCAAGATGCTTCATCCACTGCAGAGCAAAACGGACCTTTAAGGGCAGCACTTGTTCCTGATTCAGGAACCAATTGTCATGTGGATGCTTGTTCCACTACAGAGCAATGTGGATCTTCGAAGTCACAGCCCACTTCAGCAACCACTGATCACAATTTAGCAGTGGACCAGCCATCTCCTGATACCAGTGTGTCATCTGTGGAGCCTGCATTTGACACACCAAAATCCTTCATTGGATCAGAAAGTACACGGACTACTTCTGCCCAAAGTGATGATTCTACGAGCATCCAGAGCTCATCAGATGCTGATGTGGCTGGAAATACCAAAGCCACGGTGACAGTTGTAAAGAACCCAGCAAGCCATATAATGGATGGTTTGATGCGTAGATGGGATTTCAACTTCTTTCGAAACAGTAGATGA 1806 44.08 MEQLVNFIIRPPRAEYDPKNDLLDQEFMLKGKWFQRKDLEVVNSRGDVLQCSHYVPIVSPDGKPLPCVIYCHGNSGCRADASEAAIILLPSNITVFTLDFSGSGLSGGEHVTLGWHEKDDLKAVVDHLRADGNVSLIGLWGRSMGAVTSLMYGAEDPSIAGMVLDSPFSDLVDLMMELVDTYKFRLPKFTVKFAIQYMRKAIQKKAKFDITDLNTIKVAKSCFVPVLLGHAIDDDFILPHHADRIFEAYVGDKNIIKFEGDHNSPRPQFYFDSINIFFHNVLQPPEDEVGGTFFDTMYDYFGKGSWTTVPEVGHADHGSSSASKVSAPATSSTEDVIKQLRSKRPMSRMEVPSDIPCKDKQAEAEEEGSEKDGYSSSSGMISFELSNGHPYGPHVPTTIDDDQYVEYPLDNLADFPSNVEEEERMFMEAVIESLKELETRHPHAEDQPPNVGTALPESSKKDNQDASSTAEQNGPLRAALVPDSGTNCHVDACSTTEQCGSSKSQPTSATTDHNLAVDQPSPDTSVSSVEPAFDTPKSFIGSESTRTTSAQSDDSTSIQSSSDADVAGNTKATVTVVKNPASHIMDGLMRRWDFNFFRNSR* 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4144868 4176378 + Vvi5g413 Vvi5g413 786555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g413 601 Coils Coil 427 447 - -
Vvi5g413 601 MobiDBLite consensus disorder prediction 319 336 - -
Vvi5g413 601 Gene3D alpha/beta hydrolase 34 288 IPR029058 -
Vvi5g413 601 MobiDBLite consensus disorder prediction 312 399 - -
Vvi5g413 601 MobiDBLite consensus disorder prediction 452 474 - -
Vvi5g413 601 PANTHER ALPHA/BETA-HYDROLASE 495 598 - -
Vvi5g413 601 PANTHER ALPHA/BETA-HYDROLASE 1 486 - -
Vvi5g413 601 SUPERFAMILY alpha/beta-Hydrolases 30 286 IPR029058 -
Vvi5g413 601 MobiDBLite consensus disorder prediction 495 565 - -
Vvi5g413 601 Pfam Serine aminopeptidase, S33 64 175 IPR022742 -
Vvi5g413 601 MobiDBLite consensus disorder prediction 337 372 - -
Vvi5g413 601 MobiDBLite consensus disorder prediction 439 483 - -
Vvi5g413 601 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 486 - -
Vvi5g413 601 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 495 598 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g413 - - - vvi:100257995 1192.18
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g413 . . . . . . . . Cmo08g01150 Cmo17g00267 . . . . . . . . . . . . . . Cla06g00535 Cam06g0577 Cec06g0574 Cco06g0582 Clacu06g0564 Cmu06g0558 Cre06g1326 Cone14ag0810 . Cone7ag0206 . . . Chy11g01440 . . . . . . . . . . . . Cma08g01179 Cma17g00280 Car08g01055 Car17g00255 Cpe12g00233 Cpe17g00117 Bhi12g01785 . . Lac12g2354 . . Lcy13g0224 . . . . . . . Lsi09g01367 . . Cme11g01945
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001541 2 3 1 1 1 2 4 2 2 2 2 2 4 2 2 4 2 4 3 2 2 4 2 2 2 3 2 4 2 1 71