Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g417 ATGCAGCCCGATCAGCGACGAAAGGCATCTGTGGAGGTAGATTTCTTCACTGAATACGGCGAGGGAAGCAGGTACAGGATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTCGTTTGTTCTGCATATGATACTCATTGTGGGGAAAAGGTTGCAATTAAGAAGATCAATGATATCTTTGAACATGTCTCTGATGCCACACGAATCCTTCGAGAGATCAAGCTGCTTAGACTCCTGCGTCACCCTGACATTGTGGAAATCAAGCACATCTTGCTGCCTCCTTCCAGCAGGGAATTCAAAGACATATATGTGGTTTTTGAACTCATGGAGTCTGATTTACACCAGGTTATTAAAGCAAATGATGATTTGACTCCAGAACATTATCAATTTTTTCTTTATCAGCTTCTGCGAGGCTTGAAGTACATACACACAGCAAATGTCTTTCATCGGGATCTGAAACCAAAGAACATCTTAGCAAATGCTGACTGCAAACTCAAGATCTGTGACTTTGGTCTTGCAAGAGTAGCCTTTAATGATACTCCGACTGCTATATTTTGGACAGATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAGTATACACCAGCAATAGATATATGGAGCATTGGATGCATCTTTGCAGAGCTTTTAACTGGAAAACCTCTCTTTCCTGGAAAAAATGTTGTTCACCAATTGGATCTGATGACTGATCTCTTGGGAACCCCGTCTGCAGAAGCCATTGCTAGGGTACGCAATGAGAAGGCTCGGAGATATTTAAGCAGCATGCGGAAGAAAAAGCCCATTCCCTTGTCCCAGAAATTCCCAAATGCAGATCCCCTTGCACTCCGTTTGCTGGAAAGAATGCTAGCATTTGAACCCAAGGACCGACCTTCCGCTGAAGAGGCTCTTGCAGATCCATATTTTAAAGGTTTAGCCAAGGTTGAGAGAGAACCCTCTGCTCAACCAGTTACCAAGTTGGAATTTGAATTTGAGAGGAGAAGGATAACTAAAGAAGACGTACGAGATCTCATTTACCGAGAGATTCTTGAGTACCATCCAAAGATGTTGAAAGAGTACTTAGAGGGAACCGAACCAACAAGCTTCATGTATCCAAGTGCTGTTGACCAGTTCAAGAAGCAATTCGCTTACCTCGAGGAGCACTACGGAAATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAGGCCATGTGTATTATATTCAGATAATTCATTACATAATTCAGCAGAGGTCGCAGATGATCTCTCCAAATGTTGCATTAAGGAAGTCGAGAAGCCACATATGGACAGGAGTTGTGGAATCCCCATGGCAAGGCTTCCTCTCCAAGTTCCTCAAAGTACCCAAGGAGGTGCTGCAAGGCCTGGAAAGGTTGTTGGTTCAGTGTTGCGTTACAACAACTGTGGAGCAGCTGCAGCAGCAGAGGTTCTTGAACAGCGGAGAATGGTTAGGAATCCACCTGTCGCAAGTCAATATAATGCGTCTAGCTGTTCATATCCAAGAAGAAACTCGAGCTGTAAAAATGAGAGAGGAGACAATGAAGGGGTAGAAGGATCTAATGGGTTGCAGCCAAAGCCTCAATACATGGCAAGGAAAGTGGCTGCTGCTCAAGGTGGATCTGGAAGTCACTGGTACTAA 1692 44.15 MQPDQRRKASVEVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDTHCGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSSREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDLLGTPSAEAIARVRNEKARRYLSSMRKKKPIPLSQKFPNADPLALRLLERMLAFEPKDRPSAEEALADPYFKGLAKVEREPSAQPVTKLEFEFERRRITKEDVRDLIYREILEYHPKMLKEYLEGTEPTSFMYPSAVDQFKKQFAYLEEHYGNGATVAPPERQHASLPRPCVLYSDNSLHNSAEVADDLSKCCIKEVEKPHMDRSCGIPMARLPLQVPQSTQGGAARPGKVVGSVLRYNNCGAAAAAEVLEQRRMVRNPPVASQYNASSCSYPRRNSSCKNERGDNEGVEGSNGLQPKPQYMARKVAAAQGGSGSHWY* 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4205508 4215917 - Vvi5g417 Vvi5g417 786559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g417 563 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 478 - -
Vvi5g417 563 MobiDBLite consensus disorder prediction 508 543 - -
Vvi5g417 563 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
Vvi5g417 563 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Vvi5g417 563 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Vvi5g417 563 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 478 - -
Vvi5g417 563 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g417 563 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Vvi5g417 563 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vvi5g417 563 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g417 563 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g417 563 CDD STKc_TDY_MAPK 24 361 - -
Vvi5g417 563 MobiDBLite consensus disorder prediction 508 522 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76664 PF00069 Pkinase 4.90E-67 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g417 - K04371 vvi:100246022 1140.18