Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g420 ATGTACAAGAAGGCTGAAGCCAGTTTCTGGACTGCTGAGGAAGTTGACCTCTCCCATGATGTGCAGCAGTGGGAAAGCCTGTCCAATTCTGAGAAACACTTCATAAGCCATGTATTAGCATTTTTTGCTGCATCTGATGGGATTGTTTTGGAGAACTTGGCTGCAAGATTTCTACATGATATTCAAATTCCAGAAGCACGGGCATTTTATGGATTTCAAATTGCTATGGAGAATATTCATTCTGAGATGTACAGTTTGCTCTTGGAGACATATATCAAGGACTCAAAGGAGAAGCATAGATTGTTTAATGCAATTGAAAGCATATCTTGTGTAGCTGGGAAGGCTAAATGGGCTTTGGATTGGATTCAGAGTTCCACTTTATTTGCTGAGAGACTTATTGCCTTTGCATGTGTTGAAGGAATCTTTTTCTCAGGAAGCTTCTGCGCCATTTTTTGGCTTAAAAAGAGAGGATTGATGCCAGGTTTGACTTTCTCAAATGAGCTTATTTCTAGAGATGAGGGCCTTCACTGCGATTTTGCTTGCCTTCTGTACAGTTTATTACAGAAGCAGCTACCCTGGCAAAAGGTTCATCACATTGTCCATGAAGCAGTGGAAATTGAAACCCAGTTCGTTTGCGAAGCCCTGCCTTGTGCATTGATTGGCATGAACGCAACACTCATGAGCCAGTACATAAAATTTGTCGCTGACCGCCTTTTGGTTGCCCTTGGGTATGAGAGGAAATACAACGTGGAAAATCCATTTGATTGGATGGAGTTTATTTCTTTGCAATGCTCAAGGCTCAATCTTGTAATTATCCCATTAGTTAAAGTTTTCACATGGGGATGTGCAAGATGGAATCTGGAACTACAGGATGAAAGTGATGGGGTAAAGCAAACTTCTTTGAGAGAAGGGTGGGTGATTATCAAAAGGCATCTATAA 939 41.21 MYKKAEASFWTAEEVDLSHDVQQWESLSNSEKHFISHVLAFFAASDGIVLENLAARFLHDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIESISCVAGKAKWALDWIQSSTLFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQLPWQKVHHIVHEAVEIETQFVCEALPCALIGMNATLMSQYIKFVADRLLVALGYERKYNVENPFDWMEFISLQCSRLNLVIIPLVKVFTWGCARWNLELQDESDGVKQTSLREGWVIIKRHL* 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4233885 4240321 + Vvi5g420 Vvi5g420 786562

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g420 312 CDD RNRR2 1 262 IPR033909 GO:0009263
Vvi5g420 312 Pfam Ribonucleotide reductase, small chain 1 253 IPR000358 GO:0009263
Vvi5g420 312 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN A 1 304 - -
Vvi5g420 312 Gene3D Ribonucleotide Reductase, subunit A 1 258 IPR012348 GO:0016491
Vvi5g420 312 ProSitePatterns Ribonucleotide reductase small subunit signature. 76 92 IPR030475 -
Vvi5g420 312 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN 1 304 IPR000358 GO:0009263
Vvi5g420 312 SUPERFAMILY Ferritin-like 1 258 IPR009078 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g420 K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1] - vvi:100263189 536.184
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g420 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00556 . . Bpe13g00627 . Bma06g01535 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002424 3 2 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 2 4 4 2 3 2 6 2 60