Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g421 ATGGCGGTGTCCGTACACACCAGTATATGGGACAATATCCTAGAGCACACCAACGTGGCACAGGAAAAGGGTAGTGATCCTCTGCTTTGGGCCGTACAGTTGTCGTCGAGTTTGAGTTCGGCAGGAGTGTCGCTGCCCTCGGTGGAGGTCGCAAACCTTCTGGTTTCGCATATCTGTTGGGGAAACAATGTTCCAATTGCCTGGAAGTTTCTGGAGAAGGCTTTGATGATAAAGATCGTGCCTCCCATGCCCGTTCTAGCTCTGCTTTCTACCAGGGTCATTCCAAGTCGGCATTCTCGTCCAACAGCATATAGGCTTTATTTGGAACTCATTAAGAGACATGCCTTCACACTTAAATCTCTAATTGATGGCCCAAATTATCAAAAAGACATGAAATTCATAGACAGTGTTCTTCATCTTTCCTTGGCATTTGGTCTGCAAGCTAGTGAACCGGGGATTCTTGTGGTTGAATTTATTTTTTCGATGGTACTGATGTTGCTTGACGCATCATTAGATGACGAAGGATTGATTGAACTAACCCCAGAAAAGAAGTCTAAATGGGCTAATGACATGGAAATAGACAGTCATGATGATTATGATGAGAAGAGGACTGACCTTCATGAAAGATTGCAGAAAATAAATACGGTCATGGCCATTGATTTAATTGGGCAATTTTTGCAAAATAAAGCAACTTCTAAGATTTTATACTTGGCACGCCGAAACATGCCCACACATTGGGTTGTTTTCCTCCAGCGGATACAGCTGCTTGGAGCAAATTCATCTGCATTGAGAAATTCAAAAGTTATAACTCCGGAGGCTCTTCTGCACTTGACATCAGACACTCGCATAGTCTTGTCTCGGAAATGTAAATCAAGTTCCCTGCAAAAGTTCCATGCAGTTATGGCTTTTGGATCTCTGGCTTCTTCTGCTGGTCTCTGCCATGGGGCTAGTCGCTCTGCTCTTTGGCTTCCTCTTGATCTAGTATTAGAAGATGCCATGGATGGATCGCTAGTTTCTGCAACAAGTGCTATTGAAACTATTACAGGTTTGATAAAGGTTCTTCAAGCAATTAATGGCACCACCTGGCATGACACCTTTTTGGGTCTTTGGATTGCAGCTCTTCGTCTTGTTCAAAGGGAAAGGGATCCCATTGAGGGTCCTATGCCTCGCCTTGATACTCGCTTGTGCTTGTTACTCTCTATCACGACTCTTGTGGTTGCTGATCTTATTGAGGAGGAGGAAAAAAAGCATGTTCCAGGGAAGTGTCGCAAGGATTTAGTTTCCAGCTTACAGATGCTGGGTGACTATGAGGGCTTGCTGACTCCACCCCAATCTGTTATTTCTGCGGCCAACCAAGCTGCTGCAAAAGCGATGATGCTTGTTTCAGGCATCAATGTTGGGAGTGCATACTTTGAATTCATCAGCATGAAAGATATGCCAATCAACTGTTCTGGAAACATGCGCCATCTAATAGTTGAGGCTTGTATTGCCAGAAATCTGTTGGACACATCAGCATATTTCTGGCCAGGCTATGTGAATGGACGCATCAACCAAATACCTCATAGCATTCCTCCTCAAGTGCTTGGTTGGTCATCATTTATGAAGGGGGCCCCACTTTCTCCAGTAATGATAAATGCTTTGGTTTCAACTCCAGCTTCAAGTTTAGCAGAGCTCGAGAAAGTATTTGAGATTGCAGTCAGAGGATCAGATGATGAGAAGATATCTGCTGCTACTATCCTTTGTGGAGCCTCTTTGATTCGGGGCTGGAATATACAGGAACACATTGTTCATTTCATTACTAGATTACTTTCTCCACCAGTTCCAGCAGATTATTCTGGGAGTGACAGCCATTTGATAGCTTATGCTCCAATGCTGAACATACTTCTTGTTGGAATAGCTTCTGTTGATTGTGTCCAGATTTTCTCATTACATGGCTTGGTACCTCATCTAGCTGGTTCATTGATGCCAATCTGTGAAGTTTTTGGGTCATGTGTGCCCAATGTCTCATGGACACTCACAACAGGGGAAGAAATCAATGCCCATGCTATCTTTTCAAATGCATTTACTCTTCTTCTAAAGCTATGGAGGTTTAATCATCCACCTCTCGAACATGGTGTGGGGGATGTACCCCCAGTTGGGTCCCAACTAACTCCTGAATACCTCCTATTAGTTCGAAACTCCCACCTAGTATCTTCTGGAACTATCCACAATCGAAATAAAACAAGATTCTCAGGTGTTGCAAGTTCATCATCTGAACAACCCATATTTTTGGACTCATTTCCAAAACTAAAAGTCTGGTATCGACAGCATCAAGCATGTATAGCTTCAACCCTCTCAGGTCTTGTTCATGGAACACCTGTTCATCAGATTGTTGATGGGCTTCTCAACATGATGTTCAGAAAAATTAATAGAGGGAGTCAGTCATTGTCTTCTGTAACTTCTGGAAGTAGTAGTTCATCTGGACCTGGAAGTGACGATCCTTTAAGACCTAAATTACCTGCATGGGATATCCTGGAAGTTGTACCTTTTGTGGTTGATGCTGCTTTAACAGCCTGTGCCCATGGAAGGCTGTCTCCTCGTGAACTGGCTACAGGGCTTAAAGATTTAGCTGATTTTCTTCCTGCATCTTTAGCAACCATTATAAGTTACTTCTCGGCTGAAGTAACACGAGGTGTCTGGAATCCAGTTTTTATGAATGGAACAGATTGGCCAAGCCCTGCTGCAAATCTGTCTAATGTTGAGGAACAGATCAGGAAAATCCTAGCTGCCACTGGTGTTGATGTCCCAAGCCTTGCTGCAGGAGGAAACTCTCCAGCTACCCTGCCACTGCCCTTGGCTGCTTTTGCTAGCCTCACCATAACCTATAAGATTGACAGAGCCTCACAGCGTTTTCTGAATCTGGCTGGCCCAGCCCTGGAGGCACTTGCTGCAGATTGCCCATGGCCTTGTATGCCAATTGTAGCTTCCCTATGGACCCAAAAGGCAAAGCGCTGGAGTGACTTTCTCGTCTTTTCTGCTTCTCGTACAGTCTTTCTCCACAACAGCGATGCAGTGGTACAGCTTCTCAAAAGCTGCTTCACTGCCACACTTGGCCTGAAAACCACTCCTATATCAAGCAATGGTGGTGTGGGAGCCCTTCTTGGCCATGGATTTGGATCTCATTTTTGTGGTGGGATTTCTCCAGTTGCCCCAGGGATTCTATATCTACGTGCCTACCGGTCTATCAGAGATGTAGTCTTCATGGCAGAAGAGATTGTCTCCCTCTTGATGCATTTTGTGAGAGAAATAGCAAGTAGTCAGCTTTCTGGAGAGAGATCAGAGAAGCTGAAGAAGGCTAAGAATGAAATGAAATATGGCCAAATTTCACTTGGAGCAGCACTGGCAAGAGTGAAGCTCATTGCTTCACTTGCAGCTTCTTTAGTATGGCTCTCTGGTGGCTTGGGTCTGGTTCAGTCATTGATAAAAGAAACTCTGCCATCTTGGTTTATATCCGTCCACAGGTCTGAACAAGAAGAGGGGTCAGGAGGAATGGTTGCAATGCTTGGGGGGTATGCACTTGCATACTTCACAGTGCTTTGTGGAGCTTTTGTGTGGGGTGTGGACTCATCATCATCAGCATCAAAGCGACGTCCAAAAATCCTTGGGAGCCATATGGAATTCCTTGCGAGTGCCCTTGATGGGAACATATCACTGGGTTGTGATTGTGCCACTTGGCGTGCATATGTGTCAGGGTTTGTAAGCCTGATGGTTGGTTGCACTCCAACCTGGGTCCTGGAGGTTGACGTCAATGTATTGAAGAGACTAAGCAAGGGGCTAAGGCAGTGGAATGAAGAAGAGCTTGCTCTGGCTTTGCTGGGGATTGGTGGGGTTGGTACAATGGCTGCAGCTGCTGAACTGATAATTGAAACTGAGATATAA 3918 45.0 MAVSVHTSIWDNILEHTNVAQEKGSDPLLWAVQLSSSLSSAGVSLPSVEVANLLVSHICWGNNVPIAWKFLEKALMIKIVPPMPVLALLSTRVIPSRHSRPTAYRLYLELIKRHAFTLKSLIDGPNYQKDMKFIDSVLHLSLAFGLQASEPGILVVEFIFSMVLMLLDASLDDEGLIELTPEKKSKWANDMEIDSHDDYDEKRTDLHERLQKINTVMAIDLIGQFLQNKATSKILYLARRNMPTHWVVFLQRIQLLGANSSALRNSKVITPEALLHLTSDTRIVLSRKCKSSSLQKFHAVMAFGSLASSAGLCHGASRSALWLPLDLVLEDAMDGSLVSATSAIETITGLIKVLQAINGTTWHDTFLGLWIAALRLVQRERDPIEGPMPRLDTRLCLLLSITTLVVADLIEEEEKKHVPGKCRKDLVSSLQMLGDYEGLLTPPQSVISAANQAAAKAMMLVSGINVGSAYFEFISMKDMPINCSGNMRHLIVEACIARNLLDTSAYFWPGYVNGRINQIPHSIPPQVLGWSSFMKGAPLSPVMINALVSTPASSLAELEKVFEIAVRGSDDEKISAATILCGASLIRGWNIQEHIVHFITRLLSPPVPADYSGSDSHLIAYAPMLNILLVGIASVDCVQIFSLHGLVPHLAGSLMPICEVFGSCVPNVSWTLTTGEEINAHAIFSNAFTLLLKLWRFNHPPLEHGVGDVPPVGSQLTPEYLLLVRNSHLVSSGTIHNRNKTRFSGVASSSSEQPIFLDSFPKLKVWYRQHQACIASTLSGLVHGTPVHQIVDGLLNMMFRKINRGSQSLSSVTSGSSSSSGPGSDDPLRPKLPAWDILEVVPFVVDAALTACAHGRLSPRELATGLKDLADFLPASLATIISYFSAEVTRGVWNPVFMNGTDWPSPAANLSNVEEQIRKILAATGVDVPSLAAGGNSPATLPLPLAAFASLTITYKIDRASQRFLNLAGPALEALAADCPWPCMPIVASLWTQKAKRWSDFLVFSASRTVFLHNSDAVVQLLKSCFTATLGLKTTPISSNGGVGALLGHGFGSHFCGGISPVAPGILYLRAYRSIRDVVFMAEEIVSLLMHFVREIASSQLSGERSEKLKKAKNEMKYGQISLGAALARVKLIASLAASLVWLSGGLGLVQSLIKETLPSWFISVHRSEQEEGSGGMVAMLGGYALAYFTVLCGAFVWGVDSSSSASKRRPKILGSHMEFLASALDGNISLGCDCATWRAYVSGFVSLMVGCTPTWVLEVDVNVLKRLSKGLRQWNEEELALALLGIGGVGTMAAAAELIIETEI* 1306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4243859 4260802 + Vvi5g421 Vvi5g421 786563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g421 1305 MobiDBLite consensus disorder prediction 808 824 - -
Vvi5g421 1305 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A 8 1302 - -
Vvi5g421 1305 PANTHER OS07G0681500 PROTEIN 8 1302 IPR039638 GO:0016592|GO:2000762
Vvi5g421 1305 MobiDBLite consensus disorder prediction 808 827 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g421 - - - vvi:100247741 2471.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g421 Vvi7g135 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g421 . . . Bda08g00388 . . . Bma05g00941 Cmo08g01146 Cmo17g00264 . . . . . . . . . . . . . . Cla06g00539 Cam06g0580 Cec06g0577 Cco06g0585 Clacu06g0567 Cmu06g0561 Cre06g1329 Cone14ag0817 . . . . . Chy11g01437 . Blo02g00645 . . . Bpe05g00752 . . . . . . Cma08g01175 Cma17g00277 Car08g01052 Car17g00252 Cpe12g00230 Cpe17g00120 Bhi12g01790 . . . . . . . . . . . . . Lsi09g01363 . . Cme11g01942
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000935 2 5 3 3 3 3 3 3 3 2 2 2 4 2 2 3 3 6 3 3 2 2 2 2 2 3 2 3 4 3 85