Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g422 ATGATCGGATCCCCCAAACCCAAATTCATCTTTGGGTCTTTGATACCAAATCTGAAATGGGTCTCCGCAGCTCCCTCTCAACTTCCTCCACACCCAATAGATCATCTCCGGGCTTTCTTCAATGGGAACAAGGACACCCAACACTCCGATTACGAACTCACTTTGGTTTCAGCCCTGAAATCATGTTCATCCCTCCTAGCCCTTTCCCAAGGCCAGCAAATCCATTCTCTGGTCTTCAAATCCGGCCTTCTTTCCAACATTTTTGTCAAAAATAGTTTGATTAGTTTTTACGTGAAATGTAGGCTTATTTCCAATGCTCGATCGCTGTTTGACACTTGCTCGGTGTTGGATCCGGTGTCTTGCAACATTATGCTTGCTGGGTATGTGAAATCTGGGTCGTTGGACAATGCTCGCCACCTGTTCGAGAAAATGCCCATTAAAGGTTGTGTCTCGTACACTACTATGGTAATGGGTTTGGCCCAAAATAATTGTTGGCTTGAAGCAATTGGGGTTTTTAAGGACATGAGATTCGCAGGTGTCATCCCAAATGAGGTGACATTGGCGAGCGTGATCTCAGCTTACTCGCATGTGGGTGGGATTTTGAATTGTCGAATGCTTCATGCATTGTCATTCAAACTGGGCCTTGAAGCCTTGAATATTGTTGCAACTAACTTGGTTCACATGTATTGTGTTTGTTCGAGGCTTGTTGATTTGGCTAGGGATTTGTTTGAGAGGATCCCTGCAAAAGATGTGGTTTCGTGGGGTACGATAATTGACGGGTATGTGCAAATTGAAAGGTTGGGTGAAGCTTTGAGGATGTATCGATCAATGCTTCGAACTGGGGTGGGACCCAATGAGGTCATGATTGTGGATTTGATTTCAGCTTGTGGACGGACAATGGCAGTGAGTGAGGGTCAGCAATTTCATGGTATAATAGTAAGAACAGGCTTTGATTGTTATGATTTTATACAGGCAACAATCATTCATTTCTACGCTGCTTGTGGTGAAATCAACCTTGCTTTTCTGCAATTTGAATTGGGTAGTAAGGACCATGTCTCTTCATGGAATGCCCTCATTTCAGGATTTGTAAGAAATGGAATGATTGAGCAGGCAAGGCAATTGTTTGATGAAATGCCTGAGAGAGATGTTTTTTCATGGAGTTCGATGATTTCTGGAAGGTGGGCTCATGAATATATTCTTAGCAACTCCATCCCTCTCAATGACAATTTGAATGCAGCACTTATCGACATGTATGCCAAGTGTGGAAGCATCACTATTGCCTTACAACTGTTCTATGAAATCCAGGACAGGGTCTCTTCTGTCTCACCATGGAATGCGATTATATGTGGGTTAGCCATGCATGGCCATGCAAATGTGTCTCTTAAACTGTTTTCCCAGCTGCAGAGGGTCAGAATTAAACCCAATTCGATCACATTCATTGGGGTATTGAGTGCATGCTGCCATGCCGGGTTGGTGGACACAGGGGAGAAGTATTTCAAGGGCATGAAGAATTTATACAACATAGAACCCAACATCAAGCATTATGGTTGTATGATTGATCTCTTGGGTAGAGCTGGACGGTTAAAAGAAGCTGCTGAAATGATAAGGAAGATGCCGATGAAGGCAGATGTGGTGATATGGGGTACACTGTTGGCAGCTTGTAGAACACATGGGAATGTAGAAATAGGAGAAAGGGCTGCCGAGAATTTGGCAAAGTTGGACATATCTCATGGGGCAGGTAGGGTTCTTCTATCCAACATATATGCAGATGCAGGGAGGTGGGACGATGCATTTTTGGTAAGGAGAGCAATGCAAAGTCAGAGAATGAAGAAGTCACCCGGGTGCAGTGGTGTTGTATGA 1860 44.03 MIGSPKPKFIFGSLIPNLKWVSAAPSQLPPHPIDHLRAFFNGNKDTQHSDYELTLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFDTCSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCVCSRLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGRWAHEYILSNSIPLNDNLNAALIDMYAKCGSITIALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSITFIGVLSACCHAGLVDTGEKYFKGMKNLYNIEPNIKHYGCMIDLLGRAGRLKEAAEMIRKMPMKADVVIWGTLLAACRTHGNVEIGERAAENLAKLDISHGAGRVLLSNIYADAGRWDDAFLVRRAMQSQRMKKSPGCSGVV* 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4262619 4264704 - Vvi5g422 Vvi5g422 786564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g422 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Vvi5g422 619 Pfam E motif 557 618 IPR046848 -
Vvi5g422 619 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 203 361 - -
Vvi5g422 619 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 269 618 - -
Vvi5g422 619 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 128 198 - -
Vvi5g422 619 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 36 144 - -
Vvi5g422 619 Pfam PPR repeat 507 538 IPR002885 -
Vvi5g422 619 Gene3D Tetratricopeptide repeat domain 43 153 IPR011990 GO:0005515
Vvi5g422 619 Gene3D Tetratricopeptide repeat domain 407 617 IPR011990 GO:0005515
Vvi5g422 619 Gene3D Tetratricopeptide repeat domain 154 308 IPR011990 GO:0005515
Vvi5g422 619 Gene3D Tetratricopeptide repeat domain 309 398 IPR011990 GO:0005515
Vvi5g422 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 151 IPR002885 -
Vvi5g422 619 TIGRFAM PPR: pentatricopeptide repeat domain 354 383 IPR002885 -
Vvi5g422 619 TIGRFAM PPR: pentatricopeptide repeat domain 119 150 IPR002885 -
Vvi5g422 619 TIGRFAM PPR: pentatricopeptide repeat domain 478 511 IPR002885 -
Vvi5g422 619 TIGRFAM PPR: pentatricopeptide repeat domain 150 184 IPR002885 -
Vvi5g422 619 TIGRFAM PPR: pentatricopeptide repeat domain 252 286 IPR002885 -
Vvi5g422 619 TIGRFAM PPR: pentatricopeptide repeat domain 515 545 IPR002885 -
Vvi5g422 619 Pfam PPR repeat family 150 194 IPR002885 -
Vvi5g422 619 Pfam PPR repeat family 443 488 IPR002885 -
Vvi5g422 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 541 IPR002885 -
Vvi5g422 619 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 203 361 - -
Vvi5g422 619 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 269 618 - -
Vvi5g422 619 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 36 144 - -
Vvi5g422 619 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 128 198 - -
Vvi5g422 619 Pfam PPR repeat 354 382 IPR002885 -
Vvi5g422 619 Pfam PPR repeat 413 436 IPR002885 -
Vvi5g422 619 Pfam PPR repeat 252 281 IPR002885 -
Vvi5g422 619 Pfam PPR repeat 119 149 IPR002885 -
Vvi5g422 619 Pfam PPR repeat 91 111 IPR002885 -
Vvi5g422 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Vvi5g422 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g422 - - - vvi:100264888 1172.53
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g422 . . . . Bpe04g01189 . . . . Cmo17g00263 . . . . . . . . . . . . . . Cla06g00540 . . . . . . . Cone15ag0813 . . . . Chy11g01436 . . . . . . . . . . . . . Cma17g00276 . Car17g00251 Cpe12g00229 . Bhi12g01792 . . . . . . . . . . . . . Lsi09g01362 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012333 1 1 0 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 27