Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g425 ATGCAGCTGATTAATGCTGTGGCCATTGCTCGGATGGCGGCGAGAAATCTCGGCGCCGAATCCCTCGGCGGTGGTGACATCGCCTTCGGCTCCTTGTGGTTCTTCATCTATGTCGGGATCTGCTGCTTTCTCGTCCTCTTCGCCGGTATTATGTCTGGTCTCACCCTAGGTCTCATGTCTCTCGGCCGCGTCGATCTCGAGATTCTTCAGCGCAGCGGCACTTCTGACGAGAAGAAGCAAGCAGCTGCTATCCTTCCAGTTGTTCAAAAGCAACACCAGCTTCTTGTGACTTTGCTTCTTTGCAATGCCTGTTCCATGGAGGCCCTCCCATTATACCTGGATAAGCTTTTCAATCAGTTTGTTGCTATTGTGCTTTCTGTTACTTTTGTCCTAGCTTTTGGAGAGGTTATTCCACAAGCAATATGCAGCAGATATGGACTTTCTGTAGGTGCAAATTTTGTATGGCTTGTCCGTATTTTAATGATAATTTGCTATCCAATTGCTTATCCAATTGGGAAGATTCTAGACTGGGTACTTGGTCATAATGAAGCATTATTTAGACGGGCTCAATTGAAAGCACTTGTCTCCATCCATGGCCAAGAGGCTGGCAAGGGAGGTGAACTCACACATGATGAGACAACAATTATAAGTGGGGCTCTCGATTTGACTGAGAAGACTGCTGAGGAAGCTATGACACCAATTGAGTCAACATTTTCCTTGGATGTCAATTCAAAATTGGACTGGGAAGCAATGGGGAAGATTCTTGCTCGTGGTCATAGTAGAGTTCCTGTCTATTCTGGTAATCCAAAAAATGTTATTGGACTTTTACTGGTGAAAAGTCTTCTCACTGTAAGAGCTGAGACAGAGACCCCGGTTAGTGCTGTTTCGATCAGGAGAATTCCAAGGGTGCCGGCAGATATGCCTCTATATGACATATTGAACGAGTTTCAGAAGGGTAGCAGTCATATGGCAGCTGTGGTGAAACCTAAAGGGAGAAACAAAAATGCTCCACAGGTCATGGATGGAAAAATAACTGAAGAAAACAAAATCACAGGTGCAGATTCCCAGCAATCTCAACATAGTGATGCAGCAACAAATGGATTGCCACGGTTGTCTGAAGATATTGAAGATGGTGAAGTTATTGGCATCATCACCCTGGAAGATGTATTTGAAGAACTTCTGCAGGAGGAGATCGTAGATGAAACTGATGAATTTGTTGATGTACATAAAAGAATACGTGTTGCTGCTGCTGCTGCTGCATCATCAATAGCACGGGCCCCATCCATTCGGAGGTTAACTGGCCACAAGGGAGCTGGAGGGCAAACTAAGCAAGTGCAATCTCCAAAGAAGTCTATTGAAGAAGATTCAAATTCTGCAAGGTTACATGGGAATCCCGGGGAGTCCCTTCTTGGGAACAAGAGATGA 1425 45.26 MQLINAVAIARMAARNLGAESLGGGDIAFGSLWFFIYVGICCFLVLFAGIMSGLTLGLMSLGRVDLEILQRSGTSDEKKQAAAILPVVQKQHQLLVTLLLCNACSMEALPLYLDKLFNQFVAIVLSVTFVLAFGEVIPQAICSRYGLSVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVSIHGQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNVIGLLLVKSLLTVRAETETPVSAVSIRRIPRVPADMPLYDILNEFQKGSSHMAAVVKPKGRNKNAPQVMDGKITEENKITGADSQQSQHSDAATNGLPRLSEDIEDGEVIGIITLEDVFEELLQEEIVDETDEFVDVHKRIRVAAAAAASSIARAPSIRRLTGHKGAGGQTKQVQSPKKSIEEDSNSARLHGNPGESLLGNKR* 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4296749 4305393 - Vvi5g425 Vvi5g425 786567

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g425 474 MobiDBLite consensus disorder prediction 350 370 - -
Vvi5g425 474 Pfam Cyclin M transmembrane N-terminal domain 40 211 IPR002550 -
Vvi5g425 474 ProSiteProfiles CNNM transmembrane domain profile. 30 212 IPR002550 -
Vvi5g425 474 CDD CBS_pair_CorC_HlyC_assoc 226 391 IPR044751 -
Vvi5g425 474 Gene3D - 212 351 IPR046342 -
Vvi5g425 474 Gene3D - 354 401 IPR046342 -
Vvi5g425 474 PANTHER DUF21 DOMAIN-CONTAINING PROTEIN 2 355 - -
Vvi5g425 474 PANTHER DUF21 DOMAIN-CONTAINING PROTEIN 348 474 - -
Vvi5g425 474 MobiDBLite consensus disorder prediction 350 366 - -
Vvi5g425 474 MobiDBLite consensus disorder prediction 428 474 - -
Vvi5g425 474 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 2 355 IPR045095 GO:0010960
Vvi5g425 474 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 348 474 IPR045095 GO:0010960
Vvi5g425 474 SUPERFAMILY CBS-domain pair 216 395 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g425 K16302 CNNM; metal transporter CNNM - vvi:100252921 882.093
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g425 Vvi7g127 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g425 . . . Bda08g00390 Bpe04g01193 Bpe14g01325 Bma04g01184 Bma05g00943 Cmo08g01144 Cmo17g00260 . . . . . . . . . . . . . . Cla06g00543 Cam06g0586 Cec06g0583 Cco06g0591 Clacu06g0573 Cmu06g0567 Cre06g1333 Cone14ag0819 Cone15ag0815 . . . . Chy11g01433 . . . . . Bpe05g00754 . . . . . . Cma08g01171 Cma17g00273 Car08g01049 Car17g00248 Cpe12g00226 Cpe17g00123 Bhi12g01796 . . . . . . . . . . . . . Lsi09g01359 . . Cme11g01938
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001077 3 9 2 2 3 2 3 2 2 2 2 2 3 1 1 3 2 4 3 2 2 2 2 2 2 2 2 9 2 2 80