Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g426 ATGGCCCTGTTTGGGTGGTCTCCATCGTCGTTCTCATTGCTTCAATCCCATAAACATTCTTCTAAAACCCTAATTACAGTTTCAACAACCACCAATCGCAAAATCCATCCAGTTTCAATCTCGTCTGCGTCGCCCGGTCTCCGTTATCCATGTCTCCGGTGCTGCGCAACTGACGATGAATCTTCTTCAACAAGAATCTTTATAAAAGGACTGCCACAATCCACCTGTGAGGGAAGTCTGAAGAAGGCATTTTCACAGTTTGGGGAAGTCAGCAAAGTGAGAATCAAGAGAAATAAAATTTCTTCTCAACCTTTGGGATTTGCATTTGCTTGGTTTACAACTGAAGAATCTGCTCAATTGGCTGTGAAAATGATGGATGGAAAGTTTTTTCATGGCAGGTTTGTATTTGTTAAAATTGCTAAGCCTGGACCTTCCAAAAGGCATGTGAAGGCAGCACCATACAAGTTCTAA 471 42.25 MALFGWSPSSFSLLQSHKHSSKTLITVSTTTNRKIHPVSISSASPGLRYPCLRCCATDDESSSTRIFIKGLPQSTCEGSLKKAFSQFGEVSKVRIKRNKISSQPLGFAFAWFTTEESAQLAVKMMDGKFFHGRFVFVKIAKPGPSKRHVKAAPYKF* 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4309880 4311482 - Vvi5g426 Vvi5g426 786568

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g426 156 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 142 IPR000504 GO:0003723
Vvi5g426 156 CDD RRM_SF 66 138 - -
Vvi5g426 156 SMART rrm1_1 65 138 IPR000504 GO:0003723
Vvi5g426 156 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 134 IPR000504 GO:0003723
Vvi5g426 156 Gene3D - 56 153 IPR012677 -
Vvi5g426 156 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 5 156 - -
Vvi5g426 156 SUPERFAMILY RNA-binding domain, RBD 59 147 IPR035979 GO:0003676
Vvi5g426 156 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 5 156 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g426 - - - csin:114295012 144.821
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g426 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .