Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g431 ATGTACTATATAGTAGCTTTCCCGCTGCCTTGTTCTCAAAATTGGCCGCACAACTATGCTTTTACTTCCAATCCACCTTATCCTCCACCCCCATACCCACCCCACAACCTTTATCCTGCGCATCCCCCTCCAATCTACTCTTCCTCCTACTACTGCTCTGGTCCCTACAATTCCTGCAATTATGCCAACCCCATGATGGCTCGATCCAATTACCAGCCTTACTACGCTAATCACGGCAATTACTGGCCTCCAATTCGGCCTCCAGTGGCGGCACCGCCGCCCCAGCAGCCGCCGCCCTATGTTGAACATCAGAATGCTAAGAAGGTCAGGAATGATGTGAATGTGCATAAGGATACGTTGCGACTCGAGGTCGATGAGCAGAACCCTGATCATTATTTGGTTTCTTTTATTTTCGATGCCTTATTTGATGGAAGCATCACCATTTACTACTTTGCCAAGGAAGAGTCCAACTGTAGGTTTTCTCCACTATTTCCTGAAGCCTATATGCCAGTGAGAATCCCTTTTCAGAAAGGACCTGGCCAGAAATTTCGTCAGCCTTCTGGAACTGGTATTGACTTAGGCTTCTTTGAGTTGGATGATCTCTCGAAACCATCACCTGGAGAAGATGTATTTCCTCTTGTCATCTCTGCTGAAACATCTCTCCCCCTTCATCCAACTGATGAACATAGTGGTGATCCTACGCCACGTACATCCCCTCACATGCAGATTACTCAAGCTGTCCTAGAGAAGCACAATGGGGACCCTTTCCAAGTGAGAGTAATCAGACAGATATTGTGGGTCAATGAGGTTCGCTATGAGCTGCGTGAGATATATGGAATTGCAAGCTCAGCATCAGAAGGCTTTAATGACAATGACTCTGGGAAGGAATGTGTGATTTGCATGACTGAACCAAAGGATACTGCTGTTTTACCTTGCCGACATATGTGTATGTGCAGCGAGTGTGCAAAAGAATTGAGGCTCCAGTCGAATAAGTGCCCCATATGCCGTCAGCCCATAGAGGAACTTATAGAGATTAAGATTGATAATGATCAGTAA 1056 46.31 MYYIVAFPLPCSQNWPHNYAFTSNPPYPPPPYPPHNLYPAHPPPIYSSSYYCSGPYNSCNYANPMMARSNYQPYYANHGNYWPPIRPPVAAPPPQQPPPYVEHQNAKKVRNDVNVHKDTLRLEVDEQNPDHYLVSFIFDALFDGSITIYYFAKEESNCRFSPLFPEAYMPVRIPFQKGPGQKFRQPSGTGIDLGFFELDDLSKPSPGEDVFPLVISAETSLPLHPTDEHSGDPTPRTSPHMQITQAVLEKHNGDPFQVRVIRQILWVNEVRYELREIYGIASSASEGFNDNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELRLQSNKCPICRQPIEELIEIKIDNDQ* 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4385230 4406549 + Vvi5g431 Vvi5g431 786573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g431 351 ProSiteProfiles Zinc finger RING-type profile. 297 336 IPR001841 -
Vvi5g431 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 346 IPR013083 -
Vvi5g431 351 SMART ring_2 297 335 IPR001841 -
Vvi5g431 351 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 10 350 - -
Vvi5g431 351 Pfam Zinc finger, C3HC4 type (RING finger) 295 341 - -
Vvi5g431 351 PANTHER MAHOGUNIN 10 350 IPR045194 GO:0061630
Vvi5g431 351 SUPERFAMILY RING/U-box 296 342 - -
Vvi5g431 351 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 296 336 IPR045195 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g431 Vvi14g241 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g431 - - vri:117914879 626.32