Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g433 ATGTCTCACATAGCTGTTGAGAGGAACAGGAGAAGACAGATGAATGAGCACCTCAAGGTTTTACGCTCCTTGACCCCATGTTTCTATATCAAAAGGGGAGATCAAGCATCTATAATAGGGGGAGTGATAGAATTCATCAAGGAGCTGCACCAAGTGCTGCAGTCTTTGGAGTCCAAGAAACGGAGGAAAAGTCTTAGCCCAAGCCCTGGTCCTAGCCCAAGGCCATTGCAGCTGACTTCTCAACCCGACACCCCCTTTGGATTGGAGAACTTCAAGGAACTAGGAGCATGTTGCAACTCTTCAGTTGCTGATGTTGAAGCAAAGATCTCCGGATCCAATGTCATCTTGAGAATAATATCTCGCCGCATACCGGGCCAAATCGTGAAAATAATCAATGTGTTGGAGAAATTTTCGTTTGAAGTCCTCCATCTGAACATCAGCAGCATGGAGGAAACTGTCCTATACTCCTCTGTGATAAAGATAGGACTCGAATGCCAGCTGAGTGTGGAGGAACTAGCTCTTGAAGTCCAGCAAAGCTTCCGCTCGGATGCTGTTTATGCCAATGAGATATAA 573 46.07 MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLQSLESKKRRKSLSPSPGPSPRPLQLTSQPDTPFGLENFKELGACCNSSVADVEAKISGSNVILRIISRRIPGQIVKIINVLEKFSFEVLHLNISSMEETVLYSSVIKIGLECQLSVEELALEVQQSFRSDAVYANEI* 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4441483 4442765 - Vvi5g433 Vvi5g433 786575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g433 190 Gene3D - 1 64 IPR036638 GO:0046983
Vvi5g433 190 PANTHER TRANSCRIPTION FACTOR MUTE 1 188 - -
Vvi5g433 190 SMART finulus 4 55 IPR011598 GO:0046983
Vvi5g433 190 PANTHER TRANSCRIPTION FACTOR FAMA 1 188 IPR044283 GO:0003700|GO:0010052
Vvi5g433 190 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Vvi5g433 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Vvi5g433 190 CDD bHLH_AtFAMA_like 1 63 - -
Vvi5g433 190 Coils Coil 190 190 - -
Vvi5g433 190 MobiDBLite consensus disorder prediction 60 79 - -
Vvi5g433 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 67 IPR036638 GO:0046983
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14848 PF00010 HLH 4.50E-08 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g433 - - vvi:100256370 345.125