Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g434 ATGGATCGTATTGATGAACGGTTTAGGGAGCAGGTAGCAGCAATTCAACGAGTTATGCTGTTAACAAGATGCTTTAAAGTGGACAATGTTCCATGCCAAATCGATGAAGGTCTCTTCCTGGGTTCTGTTGGAGCTGCTTCGAATAAGAGTGAATTGAAAAGCTTGAATATCACTCACATTTTAACTGTGGCTAATACGTTGGATCCCGCACATCCAAATGATTTCACATATAAAGTCATTGAAGTCACGGACAAAGCAGACACAAATATAGCACAGCACTTTGATGAATGTTTCAATTTCATTGATGAAGCGAAAAGACTGGGTGGTGGTGTCTTGGTTCACTGCTTTTTGGGAAGATCCAGAAGTGTGACCATTGTGATTGCTTATATGATGAAAAAGCATGGTATGAGCCTATCTCAAGCTCTAGAACATGTGAAGAGTAGGCGGCAACACGCAGCTCCTAATTATGGTTTCATGTTACAATTACAGAACTTTGAAAAATCTCTTCGAGAACAAAGATGA 522 40.04 MDRIDERFREQVAAIQRVMLLTRCFKVDNVPCQIDEGLFLGSVGAASNKSELKSLNITHILTVANTLDPAHPNDFTYKVIEVTDKADTNIAQHFDECFNFIDEAKRLGGGVLVHCFLGRSRSVTIVIAYMMKKHGMSLSQALEHVKSRRQHAAPNYGFMLQLQNFEKSLREQR* 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4446640 4450992 - Vvi5g434 Vvi5g434 786576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g434 173 CDD DSP 31 164 - -
Vvi5g434 173 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 92 149 IPR000387 GO:0016311|GO:0016791
Vvi5g434 173 Gene3D Protein tyrosine phosphatase superfamily 25 173 IPR029021 -
Vvi5g434 173 Pfam Dual specificity phosphatase, catalytic domain 38 167 IPR000340 GO:0008138|GO:0016311
Vvi5g434 173 SMART dsp_5 30 168 IPR020422 GO:0006470|GO:0008138
Vvi5g434 173 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 30 172 IPR029021 -
Vvi5g434 173 ProSiteProfiles Dual specificity protein phosphatase domain profile. 30 171 IPR020422 GO:0006470|GO:0008138
Vvi5g434 173 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 171 - -
Vvi5g434 173 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 1B 12 171 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g434 - - vvi:100264956 348.206