Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g436 ATGGCTTCCACGTTTCTTCATCTCCTCCTCTGCTCCATTCTTCTCTCAGTCTTCTCTCCATCCCTAGCCCAGACATCTTTTCGTCCTAAAGCTCTCGTTCTTCCAGTCTCCAAAGATGCTGCCTCCCTTCAGTACATCACCCACATCAACCAGAGAACCCATCTCGTCTCCATACCTCTCACCCTCGATCTTGGCGGCCAGTTTCTATGGGTGGACTGCGACCAGGGCTATGTTTCATCTTCCTACAGGCCGGTCCTAAAGGGATGCAACTACAGCACCTGTGTTCTGTCCCCTGACAATACCGTAACTGGGACTGCAACAAGCGGTGAGGTGGGCGAAGATGCTGTATCCATCCAATCCACTGATGGGTCAAACCCGGGCCGCGTTGTTTCAGTCCGTCGATTGCTTTTCACTTGTGGATCGACATTTCTGTTGGAAGGCCTTGCCAGTAGGGTCAAAGGAATGGCCGGTCTTGGAAGGAGTCGGGTTGCACTCCCTTCACAATTCTCATCTGCCTTCAGCTTTAATAGGAAATTCTCGATTTGCCTGAGTTCTTCCACAAAGTCTACTGGTGTCGTGTTCTTTGGGGATGGGCCTTATCACTGCATCGGCTTATTTTCAGGGCGAGGCTTCTGTGGAGTACTTCATTGGAGTAAAGTGAGTGACAATGTGTTGTGTCTGGGATTTGTGGATGGAGGTGTGAACCCCAGGACTTCAATCGTGATAGGGGGGCGTCAACTGGAGGACAATCTTTTACAGTTTGATTTGGCCACTTCAAGGCTGGGCTTCAGCTCATCGCTTCTGTCCCGGCAGACCACCTGTTCTAACTTCAACTTCACATCTAATGCTTGA 852 50.47 MASTFLHLLLCSILLSVFSPSLAQTSFRPKALVLPVSKDAASLQYITHINQRTHLVSIPLTLDLGGQFLWVDCDQGYVSSSYRPVLKGCNYSTCVLSPDNTVTGTATSGEVGEDAVSIQSTDGSNPGRVVSVRRLLFTCGSTFLLEGLASRVKGMAGLGRSRVALPSQFSSAFSFNRKFSICLSSSTKSTGVVFFGDGPYHCIGLFSGRGFCGVLHWSKVSDNVLCLGFVDGGVNPRTSIVIGGRQLEDNLLQFDLATSRLGFSSSLLSRQTTCSNFNFTSNA* 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4456370 4457678 + Vvi5g436 Vvi5g436 786578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g436 283 Gene3D Acid Proteases 214 283 IPR021109 -
Vvi5g436 283 PANTHER ASPARTYL PROTEASE-RELATED 86 203 IPR001461 GO:0004190|GO:0006508
Vvi5g436 283 PANTHER ASPARTYL PROTEASE-RELATED 10 85 IPR001461 GO:0004190|GO:0006508
Vvi5g436 283 PANTHER ASPARTYL PROTEASE-RELATED 218 283 IPR001461 GO:0004190|GO:0006508
Vvi5g436 283 SUPERFAMILY Acid proteases 37 202 IPR021109 -
Vvi5g436 283 Pfam Xylanase inhibitor C-terminal 218 264 IPR032799 -
Vvi5g436 283 Pfam Xylanase inhibitor N-terminal 87 197 IPR032861 -
Vvi5g436 283 SUPERFAMILY Acid proteases 219 274 IPR021109 -
Vvi5g436 283 Gene3D Acid Proteases 24 82 IPR021109 -
Vvi5g436 283 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 10 85 - -
Vvi5g436 283 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 86 203 - -
Vvi5g436 283 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 218 283 - -
Vvi5g436 283 Gene3D Acid Proteases 83 197 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g436 - - - vvi:100251215 375.555
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g436 . . . Bda08g00394 . . . Bma05g00939 . . . . . . . Cpe08g00244 . . . . . . . . . . . . . . . . . . . . . . Cme06g00641 . . . . Bpe05g00757 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01367 Chy06g00610 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002462 3 1 0 5 3 2 2 2 1 3 1 2 2 3 3 2 2 4 2 2 3 1 1 1 1 1 2 2 1 3 61