Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g437 ATGAAAAGTCTGTTTGAAAAGCAACTATCTCCCGGTACTTCCAACAATTCATCAAGTAGTGGGCAATCTAGAGATGATCAAGAGCTGGGCTCTCATGCAGTACCCAAGAATGGAGATCATGTTCGCAAGAAAAACTCATGGTTTTGCTGTTCTCCACCTGATCACATGGATCTGAACCCTGCTCGAATGATTTTAGCAGAGATGGTGGGGACTTTCATTCTGGTTTTCTGTGTATATGGGATTGAAGCAGTTACCCAGCTAATGAAAGGCGAAGTGGGTCTCTTGGAGTATGCAGTCACTGGAGGGTTGACAGTAGTAGTGTTGGTTTTCTCCATTGGGTCCATCTCCGGAGCACATGTAAACCCTTCTGTCACCATAACCTTTGCTACCCTTTGCCAATTCCCATGGTCCAAGGTTCCATACTACATATCGGCACAAATAGTAGGTTCGGTGCTGGCAACGTACGTGGGAAGGTCTATCTATGGCATAAAACCAGAACTTATCACTACCAAGCCGCTGCAAGGCTGCAGTTCTGCCTTCTGGGTCGAGTTCATCGCCACATTCATCATCATGTTCCTAGCTGTATCTTTGACAAGCCAACCTCAATCTGTAAGCCACTTGTCTGGTTTCGTCGTTGGAATAGCCATTGGACTTGCAGTGCTAATCACAGGGCCTGTTTCAGGAGGATCAATGAATCCAGCAAGGTCCTTGGGACCTGCAATTGTTTCGTGGAAATTTGACGACATATGGATTTATACAATCGCCCCAACTCTTGGAGCTGTGGCAGGAGGTCACCTGTTTCATCTGTTACGTCTCCGGCACCAGCCTTGCACCCCCAATTCCTCTCCCAACACCATTCTACTAAGCAACGCCTTCCAGTAG 882 47.17 MKSLFEKQLSPGTSNNSSSSGQSRDDQELGSHAVPKNGDHVRKKNSWFCCSPPDHMDLNPARMILAEMVGTFILVFCVYGIEAVTQLMKGEVGLLEYAVTGGLTVVVLVFSIGSISGAHVNPSVTITFATLCQFPWSKVPYYISAQIVGSVLATYVGRSIYGIKPELITTKPLQGCSSAFWVEFIATFIIMFLAVSLTSQPQSVSHLSGFVVGIAIGLAVLITGPVSGGSMNPARSLGPAIVSWKFDDIWIYTIAPTLGAVAGGHLFHLLRLRHQPCTPNSSPNTILLSNAFQ* 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4462133 4463397 + Vvi5g437 Vvi5g437 786579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g437 293 PRINTS Major intrinsic protein family signature 62 81 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi5g437 293 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi5g437 293 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi5g437 293 PRINTS Major intrinsic protein family signature 182 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi5g437 293 PRINTS Major intrinsic protein family signature 213 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi5g437 293 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi5g437 293 PANTHER AQUAPORIN NIP2-1 10 291 IPR034294 -
Vvi5g437 293 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Vvi5g437 293 SUPERFAMILY Aquaporin-like 59 279 IPR023271 -
Vvi5g437 293 Pfam Major intrinsic protein 61 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi5g437 293 MobiDBLite consensus disorder prediction 1 27 - -
Vvi5g437 293 MobiDBLite consensus disorder prediction 1 38 - -
Vvi5g437 293 PANTHER AQUAPORIN NIP7-1-RELATED 10 291 - -
Vvi5g437 293 Gene3D Glycerol uptake facilitator protein. 28 282 IPR023271 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g437 K09874 - vvi:100246074 568.155