Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g445 ATGGCGGACTCCACGGCGCACGTTAGCAGATCACGGGACCTCGACAAGCTCCTTCTCCGTCCCGGCCATCTTGTTGGCCCCACCTTCGAGCCTGGCCCCGAGTTGAGAGATGACCTTCGAAAATTTGCCACAGTGTTGGTGGTAGGGGCAGGTGGATTGGGCTGTGAACTGTTAAAGGACTTGGCTTTGTCGGGTTTCAAGAACCTCGAAGTCATAGATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAGGCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTATGGAAAGAGTTAGTGGTGTAAATATTGTGCCACATTTTTGCCGGATTGAGGACAAAGACATTGAATTTTATAATCATTTCAATATTATTGCCCTTGGTCTTGATTCCATTGAGGCTCGGAGCTACATAAATGCTGTGGCTTGTAGTTTTCTAGAGTATGATTCTGATGATAAACCACTGGAAGAAACAATTAAACCTATGGTGGATGGTGGAACTGAAGGCTTCAAGGGTCATGCCAGGGTTATCATTCCAGGGGTCACTCCATGCTTTGAGTGTACCATCTGGCTTTTTCCCCCTCAAGTGAAGTTTCCTTTATGCACTCTTGCAGAAACCCCTAGAACTGCTGCTCATTGTATTGAATATGCCCACTTAATCAAGTGGGATGAGGTTCATAGTGGAAAAGCATTTGATCCAGATGATCCTGAACATATGAAATGGGTCTACTCTGAGGCAGTTAAGAGAGCTGAGCTCTTTGGCATTCCAGGAGTCACATACTCTCTGACTCAGGGTGTGGTGAAAAATATTATACCGGCCATTGCATCCACAAATGCAATTATTTCAGCTGCATGTGCACTGGAAACCTTGAAGATTGTATCAGGATGCAGCAAAACTTTATCAAACTATCTAACGTACAATGGGGCTGAAGGTCTCCACACTAAAGTAACTGAGTTTGTGAAGGACATGGACTGTCTTATATGTGGTCCAGGTGTTCTTATTGAGTTGGATACTTCGGTTACTTTACAAAAGTTTATGGATCAACTTCAAGAGCACCCTAAGCTGCTTCTTTCAAAAGCAAGTGTCAAACACCGAGAGAAGAATCTGTACATACAGGCTCCTCCAGTATTAGAAGAGTTGACCAGATCAAACCTAAATCTACCACTCTTTGATTTAATGGGTAAAATCCGGAAGGATATCGTACATGTGACTGGTTCAACCACCAAGAATGACAAGAAAACTTCATGTCTGAGGAAACTACGTGTTGTTTTCAAGGGAATTGATGGGGCTACAGATATGGACACAGCTGGCGGGGCATAG 1350 44.37 MADSTAHVSRSRDLDKLLLRPGHLVGPTFEPGPELRDDLRKFATVLVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRLQDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDIEFYNHFNIIALGLDSIEARSYINAVACSFLEYDSDDKPLEETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKAFDPDDPEHMKWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIVSGCSKTLSNYLTYNGAEGLHTKVTEFVKDMDCLICGPGVLIELDTSVTLQKFMDQLQEHPKLLLSKASVKHREKNLYIQAPPVLEELTRSNLNLPLFDLMGKIRKDIVHVTGSTTKNDKKTSCLRKLRVVFKGIDGATDMDTAGGA* 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4515439 4529233 + Vvi5g445 Vvi5g445 786587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g445 449 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 43 412 IPR035985 GO:0008641
Vvi5g445 449 Pfam E2 binding domain 345 434 IPR014929 GO:0019781|GO:0045116
Vvi5g445 449 PANTHER NEDD8-ACTIVATING ENZYME E1 CATALYTIC SUBUNIT 8 414 IPR030468 GO:0019781|GO:0045116
Vvi5g445 449 SMART E2_bind_2 344 435 IPR014929 GO:0019781|GO:0045116
Vvi5g445 449 Gene3D - 343 427 - -
Vvi5g445 449 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 8 414 IPR045886 -
Vvi5g445 449 CDD Uba3_RUB 45 339 - -
Vvi5g445 449 Gene3D - 41 342 - -
Vvi5g445 449 Gene3D Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 211 279 IPR023318 -
Vvi5g445 449 Pfam ThiF family 32 328 IPR000594 -
Vvi5g445 449 ProSitePatterns Ubiquitin-activating enzyme active site. 209 217 IPR033127 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g445 K10686 UBA3, UBE1C; NEDD8-activating enzyme E1 [EC:6.2.1.64] - vvi:100256207 882.478
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g445 . . . . . Bpe14g01316 . . . . . Cma14g01683 . Car14g01517 Sed02g1264 . Cpe03g01420 Bhi01g00848 Tan10g0877 Cmetu06g2420 . Hepe05g1528 . Lcy11g1514 . . . . . . . Cone14ag0828 . . . Lsi05g01447 . . Cme06g00634 . . . . . . Bma02g00690 . . Cmo06g01432 Cmo14g01729 . . . . . . . . . . . . . Cla05g00570 Cam05g0626 Cec05g0637 Cco05g0632 Clacu05g0622 Cmu05g0590 Cre05g0659 . Csa03g01360 Chy06g00604 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008479 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 3 1 35