Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g450 ATGGCTTCCTTTCCAACTGCTCAGTTTCTCTCTCTTTTTCGTACTTTCTCGGGAAAATCATGTCCTCCTCGGGCTCTCGCCCCATCACTAAATTCTAATCGTAGAACCGATTCCACCGTTCACTTTACGCGGCGTGTTTCCAACTCTAATTGCAATGCCAAGCCTGCACAAGCCACTCTCAATTCTTCTTCTATAACTGAAGCATCTGATATTGGAGAGAGGACCTTGACTCTTCGAGAAATTTGCCAAGGTTGCGTACCGGAGCACGTTATTGCTCTAATCTGTTTCAGAATAGAAGAGGTCGGATTTATTGTGCCCACAGATGTACAGCAGCAAGCTCTGCCGGTTCTTCTTTCTGGTCGTGATTGCATACTCCATGCTCAGACAGGTTCTGGAAAGACTCTTACATACCTACTATTGATATTTTCAGTGGTGAACACTAAAATATCTGCTGTGCAAGCACTGATTGTGGTGCCTACTAGGGAGCTCGGAATACAAGTCACCAAAGTAGCTCGTATGCTAGCTGCAAAGCCTATGGAACCTGAATTGGAGCAGAAGTCATGTACTGTTATGGCTCTTTTAGATGGAGGAATGCTGAAAAGACACAAAAGTTGGCTAAAGGCTGAGCCCCCAACAATAGTGGTTGCAACTGTGAGAAGTTTGTGCCAAATGCTGGAGAAGCAAATTTTCAAGCTAGAATCAATGAGGGTGCTGGTAATTGATGAGGTGGATTTCATGTTCAATGCTTCAAAACAAGTTGGTTCTCTTCGAAAGCTTTTAACATCATACTCTTCAACCAATAACCGTCAGACTGTTTTTGCCAGTGCATCCATCCCCCAGCACAGACGATTCCTACATGACTGTATACAGCAGAAATGGACTAAGAGTGATGTGGTTCATGTCCACGTGAATCCAATTGAGCCCATGCCATCATCTCTACACCATAGATTTGTGATATGTAATAAATATGAAAGGCGTCAAACTTTGCTATCCTTATTGCACTCTGATGCACCTGAGTGTGGCATAATTTTTGTTGGTGAACAGTCTGAGAAGTCAAAAAAAGCTGGAAATGCTCCATCAGCAACTCTTTTAATTGATTTCTTGAAGACTTCATATGGGGGTTGTCCAGATATTCTTCTTCTAGAGGAAGACATGAATTTCAATTTGCGTGCAGCTTCACTATCAGAAGTGAGACAAAGAGGAGGCTATCTTCTTATATCAACAGATATAGCAGCCAGAGGAGTCGACTTGCCTGAAACTACCCATATATACAACTTTGACCTCCCAAGAACTGTTGTAGATTATCTTCACCGAGCTGGACGAGCTGCTAGGAAACCATTCTCTGATCAGAAATGCTGTGTCACCAACATCATAACATCTGAGGAGCGGTTTGTTTTGCAGAGGTATGAAAATGAATTGATGTTTCACTGTGAAGAACTGTTCCTATCGACCCAGTGTTAA 1461 42.78 MASFPTAQFLSLFRTFSGKSCPPRALAPSLNSNRRTDSTVHFTRRVSNSNCNAKPAQATLNSSSITEASDIGERTLTLREICQGCVPEHVIALICFRIEEVGFIVPTDVQQQALPVLLSGRDCILHAQTGSGKTLTYLLLIFSVVNTKISAVQALIVVPTRELGIQVTKVARMLAAKPMEPELEQKSCTVMALLDGGMLKRHKSWLKAEPPTIVVATVRSLCQMLEKQIFKLESMRVLVIDEVDFMFNASKQVGSLRKLLTSYSSTNNRQTVFASASIPQHRRFLHDCIQQKWTKSDVVHVHVNPIEPMPSSLHHRFVICNKYERRQTLLSLLHSDAPECGIIFVGEQSEKSKKAGNAPSATLLIDFLKTSYGGCPDILLLEEDMNFNLRAASLSEVRQRGGYLLISTDIAARGVDLPETTHIYNFDLPRTVVDYLHRAGRAARKPFSDQKCCVTNIITSEERFVLQRYENELMFHCEELFLSTQC* 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4554256 4559694 + Vvi5g450 Vvi5g450 786592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g450 486 CDD SF2_C_DEAD 313 444 - -
Vvi5g450 486 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 486 IPR001650 -
Vvi5g450 486 Gene3D - 310 480 IPR027417 -
Vvi5g450 486 SMART helicmild6 362 446 IPR001650 -
Vvi5g450 486 Pfam DEAD/DEAH box helicase 107 280 IPR011545 GO:0003676|GO:0005524
Vvi5g450 486 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 37 482 - -
Vvi5g450 486 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 114 296 IPR014001 -
Vvi5g450 486 Gene3D - 32 293 IPR027417 -
Vvi5g450 486 CDD DEADc 98 289 - -
Vvi5g450 486 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 482 - -
Vvi5g450 486 SMART ultradead3 102 316 IPR014001 -
Vvi5g450 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 454 IPR027417 -
Vvi5g450 486 Pfam Helicase conserved C-terminal domain 329 444 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g450 - - - vvi:100257883 947.962
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g450 . . . . . Bpe14g01313 . . . . Cma06g01426 . Car06g01230 . . . . . . . . . . . . . . . . . . . . Cone7ag0225 . . . . . . . . . . . Bma02g00688 . . Cmo06g01430 . . . . . . . . . . . . . . . . . . . . . . Csa03g01356 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005533 1 5 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 4 1 40