Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g452 ATGCCTTCTTCACAGCTCTATCTTCTCCTCCCCCTGCTTCTTCTCTCCCTTCTCTTGATCAATCACCCTGTACAATGTGATGATGAGGAAGACAGTCTTCTTAAAGGCATAAACGACTACAGGGCAACTTTAAACTTGACGGCCCTAGTAAAGAATGAGAATGCAGAGTGCTTTGCAGAGGAAATGGCTGACCAGTTCAATGATCAACAATGCACAAATACCACAGGAGCCAACACTGTACCAGGCACGGAGCCTACATTTGATACTTACCCCAAGCTTTTGGCTAAATGCCATTTGAATATCAGCGATACAAGGGAGGGGATGATAATGCCTGCTTGTGTTCCTGACCTTGTTGCAAGCCAACTCCTCTCTAACTTCACACAGTCGCAGTACTCAGAGTATCTCAATGACACTAAATATACCGGAATTGGAATAGGTACCGAAGACAACTGGATGGTTGTCGTGCTGACCACTAGCACTCCTGGAGGAAGCTTTGCGACTTACAATGCTGCCAGTTTGGTTTCCAAGACTAATCTGATCTACCACTTGCTGTTTCTGCTGATGAGTTTTTTCTTCTTCTTGTGA 585 44.96 MPSSQLYLLLPLLLLSLLLINHPVQCDDEEDSLLKGINDYRATLNLTALVKNENAECFAEEMADQFNDQQCTNTTGANTVPGTEPTFDTYPKLLAKCHLNISDTREGMIMPACVPDLVASQLLSNFTQSQYSEYLNDTKYTGIGIGTEDNWMVVVLTTSTPGGSFATYNAASLVSKTNLIYHLLFLLMSFFFFL* 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4600908 4604073 + Vvi5g452 Vvi5g452 786594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g452 194 PANTHER OS07G0645000 PROTEIN 2 194 - -
Vvi5g452 194 PANTHER OS07G0645000 PROTEIN 2 194 IPR045285 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g452 - - - vri:117914500 347.051
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g452 Vvi14g255 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g452 . . . . . Bpe14g01311 . . . Cmo17g00247 . . . . . . . . . . . . . . Cla06g00556 Cam06g0597 Cec06g0595 Cco06g0602 Clacu06g0583 Cmu06g0578 Cre06g1344 . . Cone7ag0227 Cone4ag0217 . . . . . . . . . . . . . . . . Cma17g00260 Car08g01040 Car17g00234 Cpe12g00216 Cpe17g00133 Bhi12g01817 . . . . . . . . . . . . . Lsi09g01343 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008559 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35