Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g454 ATGGGCTTTGATACGGAATCCCTGTTGGAGGCAACGTCAGGGGCCGTTGGAGCTCTGGTCAGCACCACCATCTTGTATCCCCTCGACACTTGTAAGACCAAGTACCAGGCTGAAGTCAGTGGCCATCATCAGCAGAAGTACAGGAACATTTCTGATGTTCTATGGGAGGCAATTTCTACCAACCAAGTTCTTTCATTGTACCAGGGGCTTGGGACAAAGAATCTGCAGTCGTTTATTTCCCAGTTTGTCTATTTCTATGGATACAGTTTCTTTAAGAGGTTATATTTGGAGAAAAGTGGCGCAAAAACCATTCGAACAAAGGCAAACCTGATTGTTGCTGCAGCTGCTGGGGCTTGTACTGTCTTAATGACACAGCCCTTGGATACAGCATCCTCAAGGATGCAGACAAGTGCATTTGGGAAATCTAAAGGACTTTGGAAAACTCTTTCGGAGGGTACTTGGAAGGAGGCATTTGATGGTCTTGGCATCTCTCTGCTTCTAACAGCAAACCCCTCTATCCAGTACACGGTCTTTGATCAGCTGAAACTAAGACTTTTGAAGGGGAAGCTGAGCAATAAAACTGGTACAGAATCATCCCCGGAGGCTCTTTCTGCCTTTTCTGCTTTTGTTTTAGGGGCAGTCTCTAAGTGTATTGCCACCACCGTGACATACCCAGCTATCAGGTGTAAGGTCATGCTTCAAGCTGCAGAATCAGACGAAGATGGGACGACCAAAGAAGCTCAACCCCGAAAAACAGTGTCAGATACAATCTATTCCATTTGGAAAAGAGAAGGCCTGCTTGGTTTTTTCAAAGGATTAGAGGCCCAGATCCTGAAAACCGTGTTAAGCTCAGCCCTGCTTCTGATGATTAAGGAGAAGATCACAAAGACAACATGGGTCATACTGCTTGCACTTAGAAGGTATCTTACCGTCAACAGGACCAGATTAAAAGCTGCTTGA 960 45.62 MGFDTESLLEATSGAVGALVSTTILYPLDTCKTKYQAEVSGHHQQKYRNISDVLWEAISTNQVLSLYQGLGTKNLQSFISQFVYFYGYSFFKRLYLEKSGAKTIRTKANLIVAAAAGACTVLMTQPLDTASSRMQTSAFGKSKGLWKTLSEGTWKEAFDGLGISLLLTANPSIQYTVFDQLKLRLLKGKLSNKTGTESSPEALSAFSAFVLGAVSKCIATTVTYPAIRCKVMLQAAESDEDGTTKEAQPRKTVSDTIYSIWKREGLLGFFKGLEAQILKTVLSSALLLMIKEKITKTTWVILLALRRYLTVNRTRLKAA* 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4607596 4617180 - Vvi5g454 Vvi5g454 786596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g454 319 Gene3D Mitochondrial carrier domain 4 299 IPR023395 -
Vvi5g454 319 Pfam Mitochondrial carrier protein 203 296 IPR018108 -
Vvi5g454 319 Pfam Mitochondrial carrier protein 104 187 IPR018108 -
Vvi5g454 319 Pfam Mitochondrial carrier protein 9 98 IPR018108 -
Vvi5g454 319 PANTHER PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1 1 318 - -
Vvi5g454 319 PRINTS Mitochondrial carrier protein signature 20 38 IPR002067 GO:0055085
Vvi5g454 319 PRINTS Mitochondrial carrier protein signature 67 85 IPR002067 GO:0055085
Vvi5g454 319 PRINTS Mitochondrial carrier protein signature 113 135 IPR002067 GO:0055085
Vvi5g454 319 SUPERFAMILY Mitochondrial carrier 8 293 IPR023395 -
Vvi5g454 319 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 184 IPR018108 -
Vvi5g454 319 ProSiteProfiles Solute carrier (Solcar) repeat profile. 5 94 IPR018108 -
Vvi5g454 319 PANTHER PEROXISOMAL ADENINE NUCLEOTIDE TRANSPORTER 1 1 318 IPR045900 GO:0005347|GO:0006635|GO:0015217
Vvi5g454 319 ProSiteProfiles Solute carrier (Solcar) repeat profile. 203 297 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g454 - - - vvi:100252792 620.542
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g454 Vvi14g259 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g454 . . . . . . Bma04g01199 . . Cmo17g00246 . . . . . . . . . . . . . . Cla06g00557 Cam06g0598 Cec06g0596 Cco06g0603 Clacu06g0584 Cmu06g0579 Cre06g1345 Cone14ag0831 . . . . . . . . . . . . . . . . . . . Cma17g00259 . Car17g00233 Cpe12g00215 . Bhi12g01818 . . . . . . . . . . . . . Lsi09g01342 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001531 4 2 2 4 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 3 2 2 3 2 72