Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g455 ATGCAAGACATATTCGGATCAGTTCGCCGATCTCTAGTATTTCGACCAGCATCCGGCGAAGATGGAGAATATGGAGGATATGGAGGCCCGGTGGAGAAAATATGGTCCAGCATTCGCAAATCTGGAATCGGACTCTTTTCAAGACAGTCTGTTCGTGCGTTGCCTCCGATCCCCAAAGATGAGGCGCCTTCGATCCGGTGGAGGAAAGGCGAGTTAATCGGGTGTGGCGCATTCGGGCGAGTCTATATGGGGATGAATCTTGATTCCGGAGAGCTTCTTGCCATTAAGCAGGTTTCAATTGCTGCGAATAGTGCTTCAAAAGAAAAAACGCAGGCTCACATCAGAGAGCTTGAGGAAGAAGTGAAGCTTCTGAAGAATCTCTCACATCCAAACATTGTTAGATATTTGGGAACTGCAAGAGAAGATGAGTCATTGAACATTTTGTTGGAGTTTGTGCCGGGAGGGTCCATTTCGTCACTCTTAGGAAAATTTGGATCCTTCCCTGAGTCTGTTATAAGAATGTATACAAAACAGCTATTATTAGGATTGGAATACCTTCACAAAAATGGTATTATGCATAGGGACATAAAGGGGGCAAATATCCTGGTTGATAATAAGGGATGCATTAAACTTGCAGACTTTGGTGCATCTAAGAAAGTTGTTGAGCTGGCTACTATGACTGGTGCCAAGTCAATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGACATAGCTTCTCTGCTGATATATGGAGTGTTGGATGTACTGTTATTGAGATGGCTACAGGAAAACCTCCTTGGAGCCAGCAATATCAGGAGGTTGCTGCTCTCTTCCATATAGGGACGACTAAATCTCATCCTCCAATTCCAGAGCATCTTACTGCAGAGGCAAAAGATTTTCTATTGAAATGTTTACAAAAGGAACCAAACTTGAGGCCTGCTGCTTCAGAATTGCTGCAGCATCCATTTGTATCTGGGGAGTATCAGGAACCTCATCCAGTGTTTCAAACTTCAGTTATGGAAAATTCTGGAAACATGATGGCAACATCTGAGACAGACCTTAAGAGCTTCCCAAACCCAGTAATCAGAAGGTCAAACTGCACAAGCTCAAATAATGTTTGTAACATGGGTAGTGTGAGATGCTCAACTGTATACCCTGAGAAGTTTTCAGGAACTGGACCCCTTTGGGGAGCAAACAGTTGTGATGATGACATGTGTCAGATTGATGATAAAGACGATTTTATAGTTCATCAATCAGTAAAGTTCGGTTCAGCCATTCTTTCTGATCATCTAAATAAGAGTTTTAACCCTATGTGTGAGCCCACTGATGATTGGCCATGCAAATTTGATGAGAGTCCAGAGTTGACTAAGAGCGGAGCAAACTTATCCTCTCACCAAACCATTAGTAAGCCTGCTGGCAGCCCTAGAGCATCTAATGAGAGGGAGAATGACTTCACATTTCCATGTGGGCCATTAGTTGGAGATGATGATGATGAAGTTACAGAGTCAAAAATTAGAGCCTTTCTAGATGAAAAGGCCTTAGATTTGAAGAAGCTTCAAACGCCACTATATGAAGAATTTTACAACAGCACATTGAATGCAGCTGGTCCTCCAAGTGCTGTTGGGAAATCACATGACAATGTTACAAATTTTTTGAACTTACCACCTAAAAGCAGGTCACCAAATCAAACCCCTACCAGAAGGTTGTCAGCTGCTGTTGATGCTGCCTGTATTTCCAACTCTGCAAATCATACAAAACGTGGATTAAATGTTGGCACTATAAGTGATAGAACTTTGAAGGAAATTCAGTCGCCTCAGCTGAGTGAATGGAAAGAGCTTCTTCTTGATGCCCAGCAGGAACCAGTCAGTTTAAGCACAAACTTCTCTGAGAGACGAAGAAAATGGAAAGAAGAGCTTGATCAAGAGCTTGAGAAGAAACGAGAATTGTTGCGCCAGGCAGGTGTTGGAGGGAAGACAGCATCTCCAAAGGATCAGATTCTAAATCGGCCAAGAGAGCGGTTAAGATTTGCATTCCCAGGAAAATGA 2061 43.04 MQDIFGSVRRSLVFRPASGEDGEYGGYGGPVEKIWSSIRKSGIGLFSRQSVRALPPIPKDEAPSIRWRKGELIGCGAFGRVYMGMNLDSGELLAIKQVSIAANSASKEKTQAHIRELEEEVKLLKNLSHPNIVRYLGTAREDESLNILLEFVPGGSISSLLGKFGSFPESVIRMYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATMTGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEHLTAEAKDFLLKCLQKEPNLRPAASELLQHPFVSGEYQEPHPVFQTSVMENSGNMMATSETDLKSFPNPVIRRSNCTSSNNVCNMGSVRCSTVYPEKFSGTGPLWGANSCDDDMCQIDDKDDFIVHQSVKFGSAILSDHLNKSFNPMCEPTDDWPCKFDESPELTKSGANLSSHQTISKPAGSPRASNERENDFTFPCGPLVGDDDDEVTESKIRAFLDEKALDLKKLQTPLYEEFYNSTLNAAGPPSAVGKSHDNVTNFLNLPPKSRSPNQTPTRRLSAAVDAACISNSANHTKRGLNVGTISDRTLKEIQSPQLSEWKELLLDAQQEPVSLSTNFSERRRKWKEELDQELEKKRELLRQAGVGGKTASPKDQILNRPRERLRFAFPGK* 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4619228 4633132 + Vvi5g455 Vvi5g455 786597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g455 686 SUPERFAMILY Protein kinase-like (PK-like) 66 375 IPR011009 -
Vvi5g455 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Vvi5g455 686 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE ISOFORM X1 1 642 - -
Vvi5g455 686 MobiDBLite consensus disorder prediction 461 486 - -
Vvi5g455 686 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Vvi5g455 686 Coils Coil 637 657 - -
Vvi5g455 686 Gene3D Transferase(Phosphotransferase) domain 1 66 363 - -
Vvi5g455 686 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 642 - -
Vvi5g455 686 MobiDBLite consensus disorder prediction 461 488 - -
Vvi5g455 686 Coils Coil 100 127 - -
Vvi5g455 686 CDD STKc_MAPKKK 66 329 - -
Vvi5g455 686 MobiDBLite consensus disorder prediction 655 676 - -
Vvi5g455 686 Pfam Protein kinase domain 68 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g455 686 ProSiteProfiles Protein kinase domain profile. 67 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g455 686 SMART serkin_6 67 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g455 Vvi14g263 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76665 PF00069 Pkinase 9.00E-72 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g455 - K20606 vvi:100232947 1348.18