Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g457 ATGACGCCGGAGTACGGAATCAAGCTCGCCGTCCATCTCATCTCCACCGACTTCGGCGATCACGCCGCTAAAGTATGTGATTGTCTTCTTCGCAAAGGGACTCTAGCACTCGATGACATAGTGCGAACCGCCAAGCTCTCTCCTCAACAAGTGAAGACTTATCTGAAAGTCTTAATCCAACATAATTGTGTTCAGGCATTTGCTATGGAACATGAAGGTGGTTGTGGAGAAGGGCCTGTAGTTGTAACTCAGTACATGTTGTTGTTTGATAACATCCTTCACCGCATGAGGTTTCCCAAGTTATTGGCAATCGTGTCCAAAGAACTTGATAAAGAATGCGAGGAACTTTTTGAAGCTTTTCTTAAACATGGTTGGCTTACTTTGCAACAGATTCTAGACAGGGTACCATCAAATCAAAATGAAGGAAATTGCACAGTTCAGGATGCTCTGCGAGGAAGCTTTACTAAACTTGTGAATGCCCATTATGTTGAACGCTGCCCTGCTCCTGACCCATTTCTTGTACCCCCAGATGAAGAAAAAACTCCTGCAAGGAAGCATGATGCTAACTCTGCCAAGGCAGTTGAAGAATTAGAGATTGGAGAACAATGTGATATAGCCAAAGCAACTCCTAGCAAAGCAAAAGGATTTCCAGTTATAACTGACACCTGCGGTGACATTAATGGAGACAAAAGCATTGGCAATCCCCCTGGTGTTGTAATTGGGAAAAAGCGCAAGCAAGATGCTTTAAAATTGGATACAGAATCTGGGGCTGCTTCTGAAAAAGATGTTCCTTGGCGGGCTAATTACAAGGAACTTGTATGTCATCTCAGGCATAAGGCCTGCATTGAAAATGTGAGAGCTAGGCTGGATAGTGGAGCTGCCATTGTCTTAAGTGCTATGCTGGAGGCAACTCAAAGCGCGGAGAAGAATGTCAAAGAAGAAATTTCAGTTCTCTTGTCAATTAGTACTATTACTGAAGCAGTGATGCAGAGTGAAGCAGGTTGTAGTATGACCTTAGAACGTATCAGAGCGTCCCTTGTCCAGTTGGGTTGTCATCCCAATGGTGTAGGAGCAGATAGGACATATAATATAGATTTGAAGAAAATTATTGAACTTGCACAAAATGATGAGGTGGAATCTATGGTGTTAAAAAGATATGGGAGGGAGGCTCATAGGATATTCAGGTTACTTTCAAAGAGTTGTTGCCCACTTGAAACTACTAAGATTTCAGATACAACATTTATTGAAAAGAAGGAAGCAGCCAAGATTCTTTATAAGCTATGGAAGGATGAGTGCTTGCATATGGAGAAAATTGTTTTAAATGAATCTAGACAATCACAGTTCATGTTGTGGAAGGTGAAAAAGGACACATTTTGGAGACATATTCTTGATGAGATGTATCATGCTGCCTTAAATTTGAGTATACAAATAATTGAGCTACGGAGAGACAAACATGTTGGGGCACTAAGGGAAAGAGATGTGCGATTAGCGATACTTCTACAAGCATCCCTAATGAAGCTTGATGATGCTCTGATGCTCTTCCATGACTTCTGA 1554 41.83 MTPEYGIKLAVHLISTDFGDHAAKVCDCLLRKGTLALDDIVRTAKLSPQQVKTYLKVLIQHNCVQAFAMEHEGGCGEGPVVVTQYMLLFDNILHRMRFPKLLAIVSKELDKECEELFEAFLKHGWLTLQQILDRVPSNQNEGNCTVQDALRGSFTKLVNAHYVERCPAPDPFLVPPDEEKTPARKHDANSAKAVEELEIGEQCDIAKATPSKAKGFPVITDTCGDINGDKSIGNPPGVVIGKKRKQDALKLDTESGAASEKDVPWRANYKELVCHLRHKACIENVRARLDSGAAIVLSAMLEATQSAEKNVKEEISVLLSISTITEAVMQSEAGCSMTLERIRASLVQLGCHPNGVGADRTYNIDLKKIIELAQNDEVESMVLKRYGREAHRIFRLLSKSCCPLETTKISDTTFIEKKEAAKILYKLWKDECLHMEKIVLNESRQSQFMLWKVKKDTFWRHILDEMYHAALNLSIQIIELRRDKHVGALRERDVRLAILLQASLMKLDDALMLFHDF* 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4651063 4670328 + Vvi5g457 Vvi5g457 786599

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g457 517 Gene3D - 268 356 IPR036388 -
Vvi5g457 517 Gene3D - 366 454 IPR036388 -
Vvi5g457 517 PANTHER RNA POLYMERASE III DNA DIRECTED -RELATED 1 517 IPR039748 GO:0003697|GO:0005666
Vvi5g457 517 Gene3D - 89 173 IPR036388 -
Vvi5g457 517 Pfam RNA polymerase III subunit RPC82 helix-turn-helix domain 8 68 IPR013197 -
Vvi5g457 517 Gene3D - 2 77 IPR036388 -
Vvi5g457 517 Pfam RNA polymerase III subunit RPC82 153 340 IPR008806 GO:0003677|GO:0006351
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g457 K03023 RPC3, POLR3C; DNA-directed RNA polymerase III subunit RPC3 - vvi:104879248 1028.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g457 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004329 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 6 1 2 40