Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g458 ATGGCGATGGTCCTTGAGGGCATTATCGGTCTCGCTCTCCTTATGCTGCTCTTCATCGCCCTCGTCCTCCTCTTCGTCTGTAAGCCATGGCGCTTCTTCTTCTCTCCTAATCGCACTCGCACCATCAAGGTTGGTGATCTAGAGAGACCTCTTGTTCCAGAGGACTTGGATCTGGTTCCAAACCAAAGCAATGAATTGGGGAGAAGTTATGATCTAGGGGGATCGTGTGTTCAATCAGAAGGGTATTTGAACTCGCCACGAACACATGGGCTTGTGCATAAACAGAGGATTCCCCCTGCACCTCCACATTTGGTCCAAGATGGTAGCTTGATCCTAGATCTAATTTCTGATGCTTCAGAAGATGTTTTGGTTGGTCAGACGCTCAAGCGTCCATTTATGTTAAACCACTCAATTGAAGAGCAAAGCCATATTGGAAAGGAAGAGCTAAGTTATGACTTGAAATTTGATTCAGAGAATGATAGATTTCAAGCGTTTGTTAGGCAAGATATTGTTGATCAAAGAAGCAGCCTCACTTTGGAGGTTATCTCTGGTCCTTCTCGAGGGGATCGGTGTTCTATATCATCAACAAATACTTCTAGACTTCCAATGACCCTTGGAAGGGTTTCTCCAAGTGATTTATTGGTGAAAGATTCAGAGGTCTCAGGGAAGCATGCTCTGATAAACTGGAATTTAAATAAATTGAAGTGGGAACTGGTGGACATGGGTAGCCTTAATGGAACACTCTTGAATTCCCAATCTGTCAACCATCCTGATTCTGGAATGAGGCATTGGGGTGATCCAATTGAGCTTGCAAGTGGAGACATAATAACTCTTGGGACAACCTCAAAAATACGTGTTCAAATTGCATCTGAAACCAAATGTCAGGTCCCTTTTGGACTTGGTATAGCATCAGATCCCATGGCTTTGCGTCGCGGAGGAAAGAAGCTTCCTATGGAAGATGTGTGCTATTACCATTGGCCACTTCCTGGGACTGATCAGTTTGGACTGTTTGGCATCTGTGATGGACATGGTGGAGCAGCAGCTGCAAAATCTGCCAGCAAAATTCTGCCCGAGATGGTTGCTTCGATATTGTCAGATTCATTGAAGAGGGAGAAGGTTTTATCACGACAGGATGCTTCAGAAATCCTTAGGGATGCAGTTTCACGGACAGAAGCATTCATGAATCACCATTATGAGGGTTGTACTGCTACGGTGCTTTTGGTTTGGGCTGATGGTCATGAAAATTTCTATGCGCAATGTGCAAACGTTGGAGATTCAGCTTGTGTTATGAATGTTGATGGGAAGCAGATTAAGATGACGGAAGACCATAGAGTAACTAGTTATTCTGAAAGACAACGCATAAAAGAAATAGGAGAACCGTTAAAAGATGGGGAAACACGCCTATGTGGTCTAAACCTCGCTCGGATGCTTGGAGACAAATATATGAAAGAGCAAGATTCCCGCTTCAGTTCAGAGCCTTACATAAGTCAGGTTGTGCATATAAATCAAGCAAGCGGGGCCTTTGCACTACTGGCAAGTGATGGCTTTTGGGATGTTATTAGCCCCAAGAAGGCAATGCAGCTAGTGTTTCAGATGAAGGAGAGATGCTCTCCGGATAGGGAGAACTCGGCGGAGAAGGTTGCAAATTTTCTGTTGAGTGAGGCTAGAACACTGCGAACAAAGGATAACACCTCTATAATTTTCTTAGATTTTGATACTAACTCTAGAAAATCTTCTTGTAAACTTGATCCTTGA 1755 43.93 MAMVLEGIIGLALLMLLFIALVLLFVCKPWRFFFSPNRTRTIKVGDLERPLVPEDLDLVPNQSNELGRSYDLGGSCVQSEGYLNSPRTHGLVHKQRIPPAPPHLVQDGSLILDLISDASEDVLVGQTLKRPFMLNHSIEEQSHIGKEELSYDLKFDSENDRFQAFVRQDIVDQRSSLTLEVISGPSRGDRCSISSTNTSRLPMTLGRVSPSDLLVKDSEVSGKHALINWNLNKLKWELVDMGSLNGTLLNSQSVNHPDSGMRHWGDPIELASGDIITLGTTSKIRVQIASETKCQVPFGLGIASDPMALRRGGKKLPMEDVCYYHWPLPGTDQFGLFGICDGHGGAAAAKSASKILPEMVASILSDSLKREKVLSRQDASEILRDAVSRTEAFMNHHYEGCTATVLLVWADGHENFYAQCANVGDSACVMNVDGKQIKMTEDHRVTSYSERQRIKEIGEPLKDGETRLCGLNLARMLGDKYMKEQDSRFSSEPYISQVVHINQASGAFALLASDGFWDVISPKKAMQLVFQMKERCSPDRENSAEKVANFLLSEARTLRTKDNTSIIFLDFDTNSRKSSCKLDP* 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4673536 4694663 + Vvi5g458 Vvi5g458 786600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g458 584 Pfam FHA domain 204 279 IPR000253 GO:0005515
Vvi5g458 584 ProSitePatterns PPM-type phosphatase domain signature. 336 344 IPR000222 GO:0043169
Vvi5g458 584 Gene3D - 306 580 IPR036457 -
Vvi5g458 584 CDD PP2Cc 311 571 IPR001932 -
Vvi5g458 584 Pfam Protein phosphatase 2C 310 564 IPR001932 -
Vvi5g458 584 PANTHER PROTEIN PHOSPHATASE 2C 34 582 IPR015655 GO:0004722|GO:0006470
Vvi5g458 584 PANTHER PROTEIN PHOSPHATASE 2C 70 34 582 - -
Vvi5g458 584 Gene3D - 171 305 - -
Vvi5g458 584 SMART FHA_2 202 254 IPR000253 GO:0005515
Vvi5g458 584 ProSiteProfiles PPM-type phosphatase domain profile. 299 571 IPR001932 -
Vvi5g458 584 ProSiteProfiles Forkhead-associated (FHA) domain profile. 203 254 IPR000253 GO:0005515
Vvi5g458 584 SUPERFAMILY PP2C-like 313 572 IPR036457 -
Vvi5g458 584 SMART PP2C_4 293 569 IPR001932 -
Vvi5g458 584 CDD FHA 176 282 IPR000253 GO:0005515
Vvi5g458 584 SUPERFAMILY SMAD/FHA domain 176 282 IPR008984 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g458 K01090 - vvi:100242550 1135.17