Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g46 ATGGGTGGCGGGGGTGGGGGATTTGCATCGAATTATCAGGTGCCGCTCTCTGGTCAGAAACGGGGGTTTGGTTTCCCTGGCCGTGGAGGGTCTCCAGATCGTTATGATGGAGGTGGTTTTGCAAAACTTTTTGTTGGGTCGGTTCCAAGGACAGCCACTGAAGAAGATATACGCCCCTTGTTTGAAGAACATGGAAATGTCTTAGAAGTTGCGTTGATCAAAGATAAGAGAACTGGACAACAGCAAGGGTGTTGTTTTATAAAATATGCTACTTCAGAAGAAGCTGAAAGGGCAATTAGAGCTTTGCACAATCAATACACTTTGCCTGGGGGAGTGGGACCTATCCAAGTGAGATATGCTGATGGAGAACGAGAACGCCTTGGTGCAGTTGAATACAAGTTGTTTGTGGGCTCACTGAATAAACAGGCTACAGAAAAGGAAGTTAAGGAAATTTTTTCACCTTATGGTCAAGTTGAAGATGTCTACCTCATGCGTGATGAATTGAAGCAAAGTCGTGGATGTGGATTTGTTAAATTTTCTCATAGAGACATGGCAATGGCAGCTATTAATGCTCTTAATGGAATCTATACAATGAGAGGTTGTGATCAGCCATTAACTGTTCGGTTTGCTGATCCTAAGAGGCCTAGACCTGGGGAATCAAGGGGTGCTCCTGCATTTGGGGGTCCAGGTTTTGGCCCTCGATTTCAAGCACCAGGTGTTAGACCAACAATGAACCAAGGTGATCCTATAGGCAGTGGTCGAATTCCTCCTAATGCTTGGCGTCCAATGAGTCCACAGAATCTGGGCCCATCTTCTAATGCTGGTATTCATGGCTTTGGGAATCAGTCACTCCCAAGGTCTGGTGACGGATCAATATCTTCAACTCCTGGTGTTCCCCTGGGCGGTCTTGGTGGTTCAGCTGATGGTTCTCTTTCTGGAATTGCAGTTTCATCTTCTGCTACATCACAACAGAGTTTCAACCAGCCTATGCTACAAGTGCCTTCCATTGGTGAGCAAATATCACCGTTGCAGAAATCGCTTCAGTCTCCTCAGCATTTGCCACCTTCCCTGCAGCTACAGTCTCAAACTCCGGCATCTTATACACAGCCTCAAACTCCTCATTCATCATTACGACAATTTGGTCAGCTACAAATATCTCATTCTGCTGGTCAAACCCCCTTCAATCAAACACTTCCATCCCAACAGCTGCTTGGTTTGAGTGGACAGCTGTCTGGTTCTCAGCCTCAGGTCCAGCAGAGTGCCTCATCTGCTACTGCCCAGCAGACTCCTGTCAACCTCAACTTACAACAGCATGCTGTGTCTGTCATGGCAAATCAACATCAGGTGCCTGCTCCTTCTCAGCAGCAACTGGTCCAGCCTCTACACCAATCACCTTCTCAGTTGGCTCAGTTGCTATCACAACAAACGCAAGCCCTACAAGCTAGTTTCCAGTCATCTCAGCAGGCATTTTCTCAGCTGCAGCAACAATTGCAGCTGATGCAACCATCAAACCAAACTTTAACGTCACAGCAGGGTTCCCAGACTACTAAACAGCAGTGGCCTGGGACTGTACCACAGACTGTTGCCAGCACTGCTACCATCACACCAGCCACTGATGTGCCTTCCACAACTTCTGCTGTGCCTGTAACAACCCAGGCTGTGGCCCCTGTAAAATGTAATTGGACAGAGCACACTTCACCCGATGGATACAAATATTATCACAATAGTGTAACTGGTGAAAGCAGGTGGGAAAAACCAGAGGAGTTGACATTACTTGAACAACAGCAACAACAACAAAAGTCATCAGTTCAACAGTCACAAGCCCAATCACACACTCAAGTTTTGTCTACACAGCAAATTCCTCAAGCTCAACAAGTGCAGCTTCAAACTCAGCTCCAAGCACATCTCCAAGCACAGCTTCAGTCACAGCTCCGCCAACATCAGCAGATGCAACAGCCTCCAGTGTCTTCATCGGCTTCTGGAGTTATGGGTCAGCAAAATGTTCAGGAACTTGGTTATGCTCAAGCACAGGTAGGGGCTAGTTCAGTTAACGATCCTGCACGCTTCCAACAGGGCCTTCAAGCGGCTCAGGAGTGGATGTGGAAGAATAAGCCAGCAGGCTCTTAA 2127 47.39 MGGGGGGFASNYQVPLSGQKRGFGFPGRGGSPDRYDGGGFAKLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEEAERAIRALHNQYTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVKEIFSPYGQVEDVYLMRDELKQSRGCGFVKFSHRDMAMAAINALNGIYTMRGCDQPLTVRFADPKRPRPGESRGAPAFGGPGFGPRFQAPGVRPTMNQGDPIGSGRIPPNAWRPMSPQNLGPSSNAGIHGFGNQSLPRSGDGSISSTPGVPLGGLGGSADGSLSGIAVSSSATSQQSFNQPMLQVPSIGEQISPLQKSLQSPQHLPPSLQLQSQTPASYTQPQTPHSSLRQFGQLQISHSAGQTPFNQTLPSQQLLGLSGQLSGSQPQVQQSASSATAQQTPVNLNLQQHAVSVMANQHQVPAPSQQQLVQPLHQSPSQLAQLLSQQTQALQASFQSSQQAFSQLQQQLQLMQPSNQTLTSQQGSQTTKQQWPGTVPQTVASTATITPATDVPSTTSAVPVTTQAVAPVKCNWTEHTSPDGYKYYHNSVTGESRWEKPEELTLLEQQQQQQKSSVQQSQAQSHTQVLSTQQIPQAQQVQLQTQLQAHLQAQLQSQLRQHQQMQQPPVSSSASGVMGQQNVQELGYAQAQVGASSVNDPARFQQGLQAAQEWMWKNKPAGS* 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 507912 523990 + Vvi5g46 Vvi5g46 786188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g46 708 Gene3D - 39 126 IPR012677 -
Vvi5g46 708 ProSiteProfiles WW/rsp5/WWP domain profile. 555 588 IPR001202 GO:0005515
Vvi5g46 708 CDD RRM2_FCA 133 212 IPR034645 -
Vvi5g46 708 CDD WW 558 588 IPR001202 GO:0005515
Vvi5g46 708 MobiDBLite consensus disorder prediction 264 294 - -
Vvi5g46 708 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 212 IPR000504 GO:0003723
Vvi5g46 708 SMART rrm1_1 133 208 IPR000504 GO:0003723
Vvi5g46 708 SMART rrm1_1 42 118 IPR000504 GO:0003723
Vvi5g46 708 MobiDBLite consensus disorder prediction 210 305 - -
Vvi5g46 708 MobiDBLite consensus disorder prediction 504 524 - -
Vvi5g46 708 SUPERFAMILY RNA-binding domain, RBD 132 236 IPR035979 GO:0003676
Vvi5g46 708 SUPERFAMILY WW domain 560 593 IPR036020 GO:0005515
Vvi5g46 708 Gene3D - 557 606 - -
Vvi5g46 708 MobiDBLite consensus disorder prediction 406 425 - -
Vvi5g46 708 Pfam WW domain 559 586 IPR001202 GO:0005515
Vvi5g46 708 PANTHER FCA 13 702 - -
Vvi5g46 708 PRINTS Paraneoplastic encephalomyelitis antigen family signature 41 56 IPR002343 GO:0003723|GO:1990904
Vvi5g46 708 PRINTS Paraneoplastic encephalomyelitis antigen family signature 137 152 IPR002343 GO:0003723|GO:1990904
Vvi5g46 708 PRINTS Paraneoplastic encephalomyelitis antigen family signature 152 164 IPR002343 GO:0003723|GO:1990904
Vvi5g46 708 PRINTS Paraneoplastic encephalomyelitis antigen family signature 193 210 IPR002343 GO:0003723|GO:1990904
Vvi5g46 708 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 13 702 - -
Vvi5g46 708 MobiDBLite consensus disorder prediction 341 377 - -
Vvi5g46 708 SMART ww_5 556 588 IPR001202 GO:0005515
Vvi5g46 708 ProSitePatterns WW/rsp5/WWP domain signature. 561 586 IPR001202 GO:0005515
Vvi5g46 708 SUPERFAMILY RNA-binding domain, RBD 28 126 IPR035979 GO:0003676
Vvi5g46 708 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 200 IPR000504 GO:0003723
Vvi5g46 708 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 107 IPR000504 GO:0003723
Vvi5g46 708 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 122 IPR000504 GO:0003723
Vvi5g46 708 Gene3D - 127 217 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g46 - - - vvi:100255122 1079.7
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g46 Vvi7g415 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g46 Blo01g00037 Blo12g00030 Bda03g01189 . Bpe04g01123 . Bma04g01118 Bma05g01000 . Cmo17g00369 . . . . . . . . . . . . . . Cla06g00417 Cam06g0439 Cec06g0445 Cco06g0444 Clacu06g0426 Cmu06g0425 Cre06g1204 . Cone15ag0721 . . . Csa06g01860 . . . . . . . . . . . . . . Cma17g00380 . Car17g00351 Cpe12g00332 Cpe17g00076 Bhi12g01943 . . . . . Lcy12g0865 . . . . . . . Lsi09g01506 . . Cme11g02092
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007086 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37