Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g460 ATGGTGGCTCAGCTGGAGAGCCATCCCACTCTCGACCCTGTCCAGAAGGCCAAGACCCTCATCTGTGCCCTCAACCTCATCTCCCGCAACCTCCCTCTCCCTCCCGACGTATTCAACGCCGTTTCCTCTATCTACCATGCCGATGACCTACTCGATCGCGCCGACGTCGATACCCTCGATACTCCGTCCGAGAAGGTTTCGGATGGCCCTGGGATCTCTGGTGGAGGAGATTTGATAATAGACCTTGATGATGCACTGGTCAAGCAACGACCAAATTGCACGTCAGGTATTGAATTGACAAAATCAAGGGAAAATCGTCTGCAGAGTCACATTCAACATCGATTAACTCAACTTGAAGAGTTGCCTTCAACTAGAGGTGAGGACCTGCAGACAAAGTGCTTGCTCGAACTCTATGGGCTAAAGCTAGTGGAATTGCAAAGCAAGGTTCGTTCTGATGTGAGCTCAGAGTATTGGCTTCGGATGAATTGTGCATATCCCGACAAGCAATTATTTGATTGGGGCATGATGCGACTGCGGCGTCCTCTATATGGAGTAGGAGATGCTTTTGCAATGGAAGCTGATGATCAATTCAGGAAGAAACGAGATGCTGAGAGGCTGTCGAGGTTAGAGGAGGAGGAAAAGAACCGTTTGGAAACTAGAAAAAGAAAATTCTTCGCAGAAATACTTAACGCTGTTCGTGAATTTCAATTGCAAGTTCAAGCTTCTTTGAAACGTCGTAAACAACGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGGCAACGTGCAACAAGGGCGGAGAAACTAAGGTTCCAAGCGTTGAAAGCTGATGATCAAGAAGCATACATGAGAATGGTAAAGGAGAGCAAGAATGAACGATTAACAATGCTTCTTAAAAAAACAAACGATCTCCTTGTTGATTTGGGAGCTGCTGTTCAACGTCAAAAAGGTGCAGAACAATCAGATGGCATTGAGACACTGAAAAGCCCTGAACCTGATTTGCCAGATTTATCAGCTTCCAAGAGTGAAACACCTGATTTACTTCCTGAGGAAGATGTAGAGATACTTAACACAGATCCTGGTCCCAATGGTAAAACTGGTGATTTACTTGAAGGTCAAAGGCAGTATAATTCGGTCATTCATTCAATTCAGGAAAAGGTAACTGAGCAACCAGCTATGCTTCAAGGTGGAGAATTAAGACCATACCAGTTAGAAGGGCTTCAATGGATGCTCTCTTTGTTCAATAACAATCTGAATGGAATTTTAGCTGATGAGATGGGGTTGGGGAAGACAATTCAAACAATTTCACTGATTGCATATCTCGTGGAGAACAAAGGTGTAACTGGGCCCCATTTGATTGTGGCTCCAAAGGCTGTGTTACCAAATTGGGTAAATGAATTCTCAACATGGGCTCCTAGCATTGCAGCTGTTCTTTATGATGGGCGTCTAGATGAGCGGAAGGCATTGAGGGAAGAGATATCAGGAGAAGGGAAATTCAATGTGCTGATCACCCACTATGATCTTATTATGAGAGATAAAGCATTTTTGAAGAAAATTGACTGGCACTACATGATTGTTGATGAAGGACATCGGTTAAAAAATCACGAGTGTGCCCTTGCAAGGACTCTTGTCTCAGGCTATCAGATTCAACGTAGACTTCTGTTAACTGGTACCCCGATACAGAATAGCTTACAGGAATTATGGTCCCTGCTTAATTTTCTTCTTCCGAGCATTTTTAATTCAGTTACGAATTTCGAGGAGTGGTTTAATGCACCCTTTGCAGATCGATCTGATGTTTCTCTTACAGATGAAGAAGAGTTACTGATCATTCACCGGTTGCATCATGTTATAAGGCCATTCATATTGAGGAGGAAGAAAGATGAGGTGGAAAAGTACCTTCCTGGGAAAACCCAGGTCATATTGAAATGTGATATGTCAGCCTGGCAGAAAGCATATTATCATCAAGTAACAGACTTGGGCAGGGTTGGATTGGATACTGGATCTGGGAAGTCAAAAAGTTTACAGAACCTGTCCATGCAACTCAGAAAGTGTTGTAACCACCCATACCTATTTGTTGGAGATTATAATATCTGGCAGAAAAAGGAGGAGATGGTCAGAGCATCGGGGAAATTTGAGCTACTTGATCGTTTACTCCCAAAACTTCAGAAAGCAGGGCATAGAGTGCTGCTTTTCTCACAGATGACTCGCCTTATGGACATTCTAGAAATCTATCTACAAATGAATGAAATCAAGTATCTGAGACTGGATGGTTCAACAAAGACCGAGGAAAGAGGGACCAAGCTAAAGCAATTTAATGCTCCAGACTCTCCTTACTTCATGTTTCTTTTGAGCACTCGTGCTGGAGGTCTTGGTCTGAACTTACAAACGGCAGACACTGTGATAATTTTTGACAGCGATTGGAACCCTCAAATGGACCAACAAGCAGAGGATCGGGCCCATCGTATAGGGCAAAAGAAAGAGGTAAGAGTTTTTGTGTTGGTAAGTGTTGGATCAATTGAGGAGGTAATCTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAGGTCATCCAGGCAGGATTGTTCAATACAACTTCCACAGCTCAGGACAGAAGAGAAATGTTAGAGGAGATCATGCGTAGAGGTACAAATTCTCTTGGAGCAGATGTTCCAAGTGAAAGAGAGATCAACCGACTTGCAGCTCGATCAGATGAGGAGTTCTGGATGTTTGAGAAGATGGACGAAGAGAGAAGACAGAAGGAAAATTACAGATCTCGTCTGATGGAAGAACATGAGGTACCTGAATGGGCATATTCCACACCTGATGGCAAGGAAGAGAAATCCAAAGGTTTTGAACATGATGCCAGCAAAATTACAGGAAAGCGACGAAGAAAAGAGGTTGTTTATGCTGATTCACTTAGTGATTTACAATGGATGAAAGCTGTTGAAAGTGGGGAAGACATATCAAGACTTTCAGTTAAGGGAAAGAGGAGGGAGCATCTTCCTTCTGAGGCTAATGAATCGGATAGTGATAAAATAGGGGGAGAACAAAAGGTCCTTGAATTGAGAAGTGAAAATGTGTCTATGACAAGTGAAGGAACAAGTGAAGATACTTTCAGCTTGGCCCCGAAGAGGTTGAAGTCTGAAGGGGCAAATTCTGATCAGCGTACTGGAGGAGGCAGTTGGAATGGGCATATCCCCACATGGCAGACGCATACAAGGAGGAGATCAAGCTATGTTGTCCAAAGTTCATCTTCTGATGCTAGGGGCCAGAATTCTAACAGCAGAGGAAATGGATGGAAACCTAAGATTGATTATCTGATATGA 3333 43.59 MVAQLESHPTLDPVQKAKTLICALNLISRNLPLPPDVFNAVSSIYHADDLLDRADVDTLDTPSEKVSDGPGISGGGDLIIDLDDALVKQRPNCTSGIELTKSRENRLQSHIQHRLTQLEELPSTRGEDLQTKCLLELYGLKLVELQSKVRSDVSSEYWLRMNCAYPDKQLFDWGMMRLRRPLYGVGDAFAMEADDQFRKKRDAERLSRLEEEEKNRLETRKRKFFAEILNAVREFQLQVQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTMLLKKTNDLLVDLGAAVQRQKGAEQSDGIETLKSPEPDLPDLSASKSETPDLLPEEDVEILNTDPGPNGKTGDLLEGQRQYNSVIHSIQEKVTEQPAMLQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLVENKGVTGPHLIVAPKAVLPNWVNEFSTWAPSIAAVLYDGRLDERKALREEISGEGKFNVLITHYDLIMRDKAFLKKIDWHYMIVDEGHRLKNHECALARTLVSGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPSIFNSVTNFEEWFNAPFADRSDVSLTDEEELLIIHRLHHVIRPFILRRKKDEVEKYLPGKTQVILKCDMSAWQKAYYHQVTDLGRVGLDTGSGKSKSLQNLSMQLRKCCNHPYLFVGDYNIWQKKEEMVRASGKFELLDRLLPKLQKAGHRVLLFSQMTRLMDILEIYLQMNEIKYLRLDGSTKTEERGTKLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTNSLGADVPSEREINRLAARSDEEFWMFEKMDEERRQKENYRSRLMEEHEVPEWAYSTPDGKEEKSKGFEHDASKITGKRRRKEVVYADSLSDLQWMKAVESGEDISRLSVKGKRREHLPSEANESDSDKIGGEQKVLELRSENVSMTSEGTSEDTFSLAPKRLKSEGANSDQRTGGGSWNGHIPTWQTHTRRRSSYVVQSSSSDARGQNSNSRGNGWKPKIDYLI* 1111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4705769 4728522 + Vvi5g460 Vvi5g460 786602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g460 1110 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 627 878 IPR027417 -
Vvi5g460 1110 Pfam Helicase conserved C-terminal domain 711 824 IPR001650 -
Vvi5g460 1110 PANTHER SNF2/RAD54 HELICASE FAMILY 13 1033 - -
Vvi5g460 1110 SMART SnAC_2 917 981 IPR029295 GO:0042393
Vvi5g460 1110 Pfam SNF2-related domain 403 691 IPR000330 GO:0005524|GO:0140658
Vvi5g460 1110 PANTHER ATP-DEPENDENT HELICASE BRM 13 1033 - -
Vvi5g460 1110 SMART ultradead3 396 589 IPR014001 -
Vvi5g460 1110 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 625 IPR027417 -
Vvi5g460 1110 SMART helicmild6 740 824 IPR001650 -
Vvi5g460 1110 Coils Coil 200 223 - -
Vvi5g460 1110 MobiDBLite consensus disorder prediction 317 367 - -
Vvi5g460 1110 Coils Coil 915 935 - -
Vvi5g460 1110 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 714 881 IPR001650 -
Vvi5g460 1110 MobiDBLite consensus disorder prediction 941 966 - -
Vvi5g460 1110 Gene3D - 635 855 IPR027417 -
Vvi5g460 1110 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 412 578 IPR014001 -
Vvi5g460 1110 Pfam Snf2-ATP coupling, chromatin remodelling complex 917 981 IPR029295 GO:0042393
Vvi5g460 1110 MobiDBLite consensus disorder prediction 1025 1040 - -
Vvi5g460 1110 MobiDBLite consensus disorder prediction 994 1110 - -
Vvi5g460 1110 Gene3D - 391 634 IPR038718 -
Vvi5g460 1110 CDD SF2_C_SNF 701 835 - -
Vvi5g460 1110 MobiDBLite consensus disorder prediction 1054 1101 - -
Vvi5g460 1110 MobiDBLite consensus disorder prediction 994 1021 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g460 - - - vvi:100264840 2154.41
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g460 . . . . . Bpe14g01173 . . Cmo08g01132 Cmo17g00241 . . . . . . . . . . . . . . Cla06g00562 Cam06g0602 Cec06g0602 Cco06g0607 Clacu06g0588 Cmu06g0583 Cre06g1349 . . . . . . . . Blo02g00553 . . Bda13g00140 . . Bma02g00859 . Sed09g0640 . . Cma08g01160 Cma17g00255 Car08g01037 Car17g00229 Cpe12g00211 Cpe17g00136 Bhi12g01822 Tan06g2636 Cmetu11g0294 Lac12g2383 Hepe03g0122 . Lcy13g0197 . . . . . . . Lsi09g01338 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007862 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14849 PF00176 SNF2_N 3.50E-68 CL0023 Vvi TR