Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g461 ATGGATACCACAACGATGAATCCAGAAGGCCGGGCATTTTCTATCAAACTATGGCCCCCTAGCCAGACCACTCGGCTACTGCTTGTGGAACGAATGGCAAACAATCTTTCCACTCCATCCATTTTCACTCGAAAGTATGGTAGTCTCAGCAAAGAGGAAGCAAGGGAGAATGCCAAACAGATCGAAGAAAGGCCCTATAACCAAGCTGAGGAGCTTTTGAGGCCATTAAAAGAGCCAGGAAATTCTTATACTAAGATATGTTTCAGCAATCGAAGCTTTGGTTTAGGTGCAGCCCGTGTTGCAGAGCCTATCTTGGCTTCTCTCAAGGATCAGTTAAAGGAAGTGGACCTGTCAGATTTTATTGCTGGGAGATCGGAAGGGGAAGCTCTTGAAGTCATGGCTATATTTTCTGAGGCTCTTGAAGGTTGTGTTTTGAAGTCTCTGGACCTCTCAAACAATGCCTTGGGTGAGAAGGGTGTTAGGGCGTTTGGGGCGCTCCTGAAATCACAAAGTAGCTTGGAGGAGCTCTATTTAATGAATGATGGGATCTCAGAGGAAGCTGCTCGAGCAGTTTGTGAGTTAATCCCTTCTACTGAGAAGCTTAGGGTCCTTCAATTTCATAATAATATGACAGGAGATGAAGGGGCACTTGCTATTTCTGAGGTAGCTTACCTGAGCTACCTGAACTTGGAAGATGAGGGTGCAGTTGCTATAGCCAATGTTCTCAAGGAATCTGCTTCTGCACTGGAAGTCATGGAGATGGCTGGAAATGATATAACAGCTGAAGCTGCTCCTGCTTTAGCTGCTTGTATAGCAGCAAAGCAGCTTATCACAAAGCTGAACTTGGCCGAGAATGAACTGAGGGATGAAGGTGCCATCCAAATTAGCAAGGCATTGGAAGATGGCCATGCTCAATTGAAGGAAGTCGACTTGAGCTCCAATTTCATGAGAAGGGCTGGGGCTAGGTGCTTGGCTCGCGCTGTGGTGAAGAGTATATTTAATGAATTTCCTAATGTTCTTGGATCCTTGGATGAGAATGACCCTGAAGGAGAAGATGATAACGAATCTGGAGAGGGTGAAGATGAAGGGGATGAATTAGAATCGAAATTGAAGAATCTTGAAGTCCATCAGGAAGACTAG 1140 45.44 MDTTTMNPEGRAFSIKLWPPSQTTRLLLVERMANNLSTPSIFTRKYGSLSKEEARENAKQIEERPYNQAEELLRPLKEPGNSYTKICFSNRSFGLGAARVAEPILASLKDQLKEVDLSDFIAGRSEGEALEVMAIFSEALEGCVLKSLDLSNNALGEKGVRAFGALLKSQSSLEELYLMNDGISEEAARAVCELIPSTEKLRVLQFHNNMTGDEGALAISEVAYLSYLNLEDEGAVAIANVLKESASALEVMEMAGNDITAEAAPALAACIAAKQLITKLNLAENELRDEGAIQISKALEDGHAQLKEVDLSSNFMRRAGARCLARAVVKSIFNEFPNVLGSLDENDPEGEDDNESGEGEDEGDELESKLKNLEVHQED* 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4728527 4730147 - Vvi5g461 Vvi5g461 786603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g461 379 Gene3D Ribonuclease Inhibitor 224 374 IPR032675 -
Vvi5g461 379 Coils Coil 363 379 - -
Vvi5g461 379 MobiDBLite consensus disorder prediction 345 363 - -
Vvi5g461 379 MobiDBLite consensus disorder prediction 364 379 - -
Vvi5g461 379 Gene3D WPP domain 14 86 IPR038214 -
Vvi5g461 379 PANTHER RAN GTPASE-ACTIVATING PROTEIN 2 67 222 - -
Vvi5g461 379 PANTHER RAN GTPASE-ACTIVATING PROTEIN 2 1 70 - -
Vvi5g461 379 PANTHER RAN GTPASE-ACTIVATING PROTEIN 2 224 330 - -
Vvi5g461 379 PANTHER RAN GTPASE-ACTIVATING PROTEIN 2 329 379 - -
Vvi5g461 379 SMART LRR_RI_2 170 197 - -
Vvi5g461 379 SMART LRR_RI_2 142 169 - -
Vvi5g461 379 SMART LRR_RI_2 303 330 - -
Vvi5g461 379 SMART LRR_RI_2 198 227 - -
Vvi5g461 379 SMART LRR_RI_2 274 301 - -
Vvi5g461 379 SMART LRR_RI_2 246 273 - -
Vvi5g461 379 MobiDBLite consensus disorder prediction 340 379 - -
Vvi5g461 379 Gene3D Ribonuclease Inhibitor 103 223 IPR032675 -
Vvi5g461 379 SUPERFAMILY RNI-like 70 330 - -
Vvi5g461 379 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 224 330 IPR045203 GO:0005096
Vvi5g461 379 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 329 379 IPR045203 GO:0005096
Vvi5g461 379 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 1 70 IPR045203 GO:0005096
Vvi5g461 379 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 67 222 IPR045203 GO:0005096
Vvi5g461 379 Pfam WPP domain 14 71 IPR025265 -
Vvi5g461 379 Pfam Leucine Rich repeat 276 295 IPR001611 GO:0005515
Vvi5g461 379 Pfam Leucine Rich repeat 145 163 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g461 K14319 RANGAP1; Ran GTPase-activating protein 1 - vvi:100259658 321.627
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g461 . . . . . Bpe14g01174 . . . . Cma06g01424 Cma14g01690 Car06g01227 Car14g01523 Sed02g1253 . Cpe03g01424 Bhi01g00837 Tan10g0865 Cmetu09g1642 . . . Lcy11g1522 . . . . . . . . . . . Lsi05g01438 . . Cme06g00627 . . . Bda13g00139 . . . . . Cmo06g01427 Cmo14g01734 . . . . . . . . . . . . . Cla05g00563 Cam05g0619 Cec05g0629 Cco05g0624 Clacu05g0615 Cmu05g0583 Cre05g0651 . Csa03g01352 Chy06g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001623 3 2 2 2 3 2 3 2 2 2 2 2 3 2 1 3 2 4 2 2 2 2 1 2 2 2 2 5 3 2 69