Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g463 ATGGATTCCACCGTTACCAAGGAGGTGGCTACGGAGCTTCTCCCAATCATCAGAGTCTACAAAGATGGCACCGTCGAGCGACTTATGGCCTCCCCCATAGTTCCACCATTTCCGGAAGGAGACCCACAAACTGGAGTCTTATCCAAAGACATAAGCTTCAGCATCACCCCAGACTCCAGTATCTCCGCCAGACTCTACCTCCCAAAACTCCCGGACCAGCAATCCCATAAGCTACCTATCTTAGTCTACTTCCATGGCGGCGGATTCTGCATCGAATCCGCCTCCTCCTTCCTCGTCCACCGCTACCTCAACATCTTGGTCTCCCAAGCTAAAGTGGTTGTTGTGTCCGTTGATTACAGGCTCGCTCCTGAGCACCTTCTACCCATCGCCTATGACGACTGCTGGGATGCTCTCAATTGGTTCCTCCCCTTCCTTCGTGTCTACAAAGACGGCTCCATCGACCGCCTTGTTGACCCGCCCTCAGTTCCTCCATCTTTGGATGACCCAGACACCGGTGTTTCATCCAAGGACATTATCATCTCACCCGATACTGGTGTCTCCGCGCGGATCTACCTCCCAAAGCTCACCAACACCCACCAAAAGCTTCCCATCTTAGTCTACTTCCACGGAGATGAGCCTTGGCTGACCCAACATGGCAACTTTGATCGCATCTTCATTGGCGGCGACAGTGCCGGTGGCAACATTGCCCACAATACCGTCATGCGCGCAGGCACGGAAAGCTTGCCTAATGGGGTGAGAATTTTGGGGGCATTTCTTTCCCAGCCTTACTTCTGGGGTTCGCAGCCCATCGGATCGGAATCTGTGGAAGATCATCATCAGAAAGTGTCGTATCGGATATGGAAGTTCCTTGGGTGCAGAAGGTTGCTGGTGTGCGTGGCTGGGAAAGATGAGCTGAGGGACAGAGATGTGAGGTACTATGAAGCAGTAAGAGAGAGTGGGTGGGAAGGGGAAGTGGAGCTGTATGAGGAGAAAGAAGAAGGTCACGTGTTTCACATCTTCAACCCTGAATCTGAAAATGCTAAAAATATGGTCAGCCGTCTGGTTGCTTTTCTCCAGATGAAGTAA 1086 52.03 MDSTVTKEVATELLPIIRVYKDGTVERLMASPIVPPFPEGDPQTGVLSKDISFSITPDSSISARLYLPKLPDQQSHKLPILVYFHGGGFCIESASSFLVHRYLNILVSQAKVVVVSVDYRLAPEHLLPIAYDDCWDALNWFLPFLRVYKDGSIDRLVDPPSVPPSLDDPDTGVSSKDIIISPDTGVSARIYLPKLTNTHQKLPILVYFHGDEPWLTQHGNFDRIFIGGDSAGGNIAHNTVMRAGTESLPNGVRILGAFLSQPYFWGSQPIGSESVEDHHQKVSYRIWKFLGCRRLLVCVAGKDELRDRDVRYYEAVRESGWEGEVELYEEKEEGHVFHIFNPESENAKNMVSRLVAFLQMK* 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4744435 4746762 - Vvi5g463 Vvi5g463 786605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g463 361 Pfam alpha/beta hydrolase fold 81 278 IPR013094 GO:0016787
Vvi5g463 361 SUPERFAMILY alpha/beta-Hydrolases 151 358 IPR029058 -
Vvi5g463 361 Gene3D alpha/beta hydrolase 212 361 IPR029058 -
Vvi5g463 361 SUPERFAMILY alpha/beta-Hydrolases 7 142 IPR029058 -
Vvi5g463 361 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 290 359 - -
Vvi5g463 361 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 142 210 - -
Vvi5g463 361 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 5 140 - -
Vvi5g463 361 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 211 289 - -
Vvi5g463 361 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 81 97 IPR002168 GO:0016787
Vvi5g463 361 Gene3D alpha/beta hydrolase 144 211 IPR029058 -
Vvi5g463 361 Gene3D alpha/beta hydrolase 14 142 IPR029058 -
Vvi5g463 361 PANTHER ARYLACETAMIDE DEACETYLASE 142 210 - -
Vvi5g463 361 PANTHER ARYLACETAMIDE DEACETYLASE 211 289 - -
Vvi5g463 361 PANTHER ARYLACETAMIDE DEACETYLASE 5 140 - -
Vvi5g463 361 PANTHER ARYLACETAMIDE DEACETYLASE 290 359 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g463 - - - vvi:100264785 317.005
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g463 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0835 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023738 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 3