Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g464 ATGGAGCTTCAGAAGCGCCAAGATCAGGGCCAGCCCGAGAGGAAGGGGCAAAAACGGAAACTGGAGGAAGAATTCGAAGAGGAGCGGGAGATCTCCGTGGCGCCGTCCGGCGAGGCGCACCAGGCGTTATCCTGCGAGGTCAGTGCGCAGGTTAATATCCTCAACACAACCTTTTCGTGGAAAGAAGCCGATCGAGCCGCCGCTAAGAGAGCCACTCACGTACTCGCCGAGCTTGCTAAGAACGAGGAAGTTGTGAATGTAATCGTCGACGGTGGGGCTGTTCCGGCACTGGTGAAGCATCTGCAGGCACCGCCTTCCAGCGATGGCGACCATGACCAGAGGCCCTTCGAGCACGAGGTTGAGAAAGGGAGTGCTTTTGCTCTGGGTCTCCTTGCTGTAAAGCCAGAGCATCAGCAACTCATAGTTGATAATGGTGCTTTGTCTCATCTAGTGGATCTTTTAAAGAGGCACAGAGATGGTTCTAACTCTCGAGCTGTCAATAGTGTCATTCGAAGAGCAGCCGATGCTGTCACTAACCTTGCTCATGAGAATAGCAGTATTAAAACCAGAGTCAGGATGGAAGGCGGGATACCACCCCTTGTTCAGTTACTTGAATTTGCTGATACAAAGGTGCAACGGGCAGCTGCTGGGGCACTGAGAACCCTGGCATTTAAAAATGATGAAAATAAAAATCAGATTGTAGAATGTAATGCTCTCCCTACCCTGATTCTAATGCTTCGATCTGAGGATGCTGCTATACATTATGAAGCAGTTGGTGTAATTGGAAATTTGGTACACTCTTCGCCAAACATAAAGAAAGAAGTGCTTTTGGCTGGAGCTTTACAGCCTGTTATAGGATTACTTAGTTCGTGCTGCTCTGAGAGCCAAAGGGAGGCAGCTTTGTTACTTGGACAATTTGCTGCAACTGATTCAGATTGCAAGGTGCATATTGCACAGAGAGGTGCTGTGCGACCTTTGATTGAGATGCTTCAATCTGCAGATGTACAGCTGAGGGAAATGTCAGCCTTTGCATTGGGGAGATTGGCACAGGACACACACAATCAAGCCGGTATTGCTCATAATGGCGGTCTAGTCCCATTATTGAAGCTTCTTGATTCAAAAAATGGATCACTGCAACATAATGCTGCATTTGCACTTTATGGCCTTGCAGATAATGAGGACAATGTATCTGATTTTATCAAGGTGGGAGGGGTTCAGAAGCTGCAGGATGGAGAATTTATTGTTCAAGCAACAAAAGATTGTGTAGCCAAGACATTGAAAAGATTAGAGGAAAAGATTCATGGAAGAGTTTTGAACCATTTGTTATATCTGATGCGTGTATCTGAGAAGGCTGTTCAAAGACGAGTTGCTTTAGCTCTTGCTCATCTTTGTTCTGCAGATGATCAGAGGACAATCTTCATTGATAACAATGGATTGGAGTTGCTTCTTGGGCTTCTTGGTTCTTCAAGCCCAAAGCAGCAACTTGATGGTTCTGTGGCTCTCTACAAATTGGCCAACAAAGCCATGACTCTCTCTCCTGTGGATGCAGCTCCTCCTTCTCCCACACCCCAGGTCTATTTGGGAGAGCAATATGTAAACAGTGCTACATTGTCCGATGTTACCTTTCTAGTTGGAGGTAAAAGGTTCTATGCTCACCGAATTTGCCTTTTGGCATCTTCAGATGCATTCCGTGCAATGTTTGATGGTGGTTATCGGGAGAAGGATGCAAGAGATATAGAGATCCCGAATATCAGATGGGAGGTTTTTGAGTTGATGATGAGATTTATATACACTGGATCTGTAGAAATTACATTGGATATTGCACAAGATCTCCTCAGAGCTGCTGATCAGTATCTCTTGGAGGGACTAAAGCGTCTCTGTGAGTATACCATTGCCCAGGATATATCACTGGAAAATGTTTCAAGTATGTATGAACTTTCAGAAGCCTTCCATGCTATTTCATTAAGACACACATGCATCCTGTTTATCTTGGAGCAGTTCAGTAAACTGAGTTCTAGGCCCGGGCATTCTCATCTGATCCAACGAATAATTCCAGAGATCCGCACCTACTTTGCTAAAGCACTTACCAAGCCTAACCCACATAATTCGAGGCTATAA 2118 45.61 MELQKRQDQGQPERKGQKRKLEEEFEEEREISVAPSGEAHQALSCEVSAQVNILNTTFSWKEADRAAAKRATHVLAELAKNEEVVNVIVDGGAVPALVKHLQAPPSSDGDHDQRPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVDLLKRHRDGSNSRAVNSVIRRAADAVTNLAHENSSIKTRVRMEGGIPPLVQLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIAQRGAVRPLIEMLQSADVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIKVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAVQRRVALALAHLCSADDQRTIFIDNNGLELLLGLLGSSSPKQQLDGSVALYKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNSATLSDVTFLVGGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVEITLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILFILEQFSKLSSRPGHSHLIQRIIPEIRTYFAKALTKPNPHNSRL* 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4748333 4764341 - Vvi5g464 Vvi5g464 786606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g464 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 321 363 IPR000225 GO:0005515
Vvi5g464 705 SUPERFAMILY ARM repeat 436 609 IPR016024 -
Vvi5g464 705 SUPERFAMILY ARM repeat 62 410 IPR016024 -
Vvi5g464 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 146 IPR000225 GO:0005515
Vvi5g464 705 Pfam Armadillo/beta-catenin-like repeat 191 223 IPR000225 GO:0005515
Vvi5g464 705 Pfam Armadillo/beta-catenin-like repeat 226 265 IPR000225 GO:0005515
Vvi5g464 705 Pfam BTB/POZ domain 531 633 IPR000210 GO:0005515
Vvi5g464 705 MobiDBLite consensus disorder prediction 1 38 - -
Vvi5g464 705 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 13 699 - -
Vvi5g464 705 Gene3D - 416 521 IPR011989 -
Vvi5g464 705 Gene3D - 38 207 IPR011989 -
Vvi5g464 705 SMART arm_5 226 266 IPR000225 GO:0005515
Vvi5g464 705 SMART arm_5 310 350 IPR000225 GO:0005515
Vvi5g464 705 SMART arm_5 81 133 IPR000225 GO:0005515
Vvi5g464 705 SMART arm_5 351 391 IPR000225 GO:0005515
Vvi5g464 705 SMART arm_5 268 308 IPR000225 GO:0005515
Vvi5g464 705 SMART arm_5 466 506 IPR000225 GO:0005515
Vvi5g464 705 SMART arm_5 184 224 IPR000225 GO:0005515
Vvi5g464 705 SMART arm_5 134 182 IPR000225 GO:0005515
Vvi5g464 705 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 13 699 IPR044282 -
Vvi5g464 705 SUPERFAMILY POZ domain 530 632 IPR011333 -
Vvi5g464 705 CDD BTB_POZ_ARIA_plant 525 640 - -
Vvi5g464 705 Gene3D Potassium Channel Kv1.1; Chain A 522 664 IPR011333 -
Vvi5g464 705 Gene3D - 208 415 IPR011989 -
Vvi5g464 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 145 195 IPR000225 GO:0005515
Vvi5g464 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 237 279 IPR000225 GO:0005515
Vvi5g464 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 362 404 IPR000225 GO:0005515
Vvi5g464 705 SMART BTB_4 538 635 IPR000210 GO:0005515
Vvi5g464 705 ProSiteProfiles BTB domain profile. 538 605 IPR000210 GO:0005515
Vvi5g464 705 MobiDBLite consensus disorder prediction 1 34 - -
Vvi5g464 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 195 230 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g464 - - - vvi:100249437 1347.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g464 Vvi7g107 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g464 . . . . . Bpe14g01175 . . . . Cma06g01423 Cma14g01691 Car06g01226 Car14g01525 Sed02g1251 Cpe08g00251 Cpe03g01425 Bhi01g00836 Tan10g0863 Cmetu06g0635 . . . Lcy11g1523 . . . . . . . . . Cone7ag0235 Cone4ag0225 Lsi05g01437 . . Cme06g00626 Blo02g00552 . . . . . . . . Cmo06g01425 Cmo14g01736 . . . . . . . . . . . . . Cla05g00562 Cam05g0618 Cec05g0628 Cco05g0623 Clacu05g0614 Cmu05g0582 Cre05g0650 . Csa03g01351 Chy06g00596 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008033 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14850 PF00651 BTB 3.70E-26 CL0033 Vvi TR