Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g47 ATGGCTGCTTCACTGCTGCGTCTGCATTTCCATGACTGCTTTGTCAATGCAATTTTGCAGGGTTGTGATGCCTCTGTTTTGTTGGATGATGTTGGGAGTTTTGTCGGGGAAAAAACTGCAGCCCCGAACTTGAACTCACTGAGAGGGTTTGAAGTGATCGATGAGATAAAATCAGTGCTTGAATCTGTATGCCCTAGAACTGTCTCTTGTGCAGACATTCTTGCTATAACAGCTAGAGACTCTGTTGTTCTGTCAGGCGGGCTAGGTTGGGATGTCCAGAAAGGAAGGAGGGATAGCTTGAGTGCTAGCAAAGCAGCAGCCAACAACAACATCCCTGGCCCGAATTCTAGCGTTGCAACACTCGTGGCCAAGTTCCAGAGCGTTGGCCTCACGCTCAACGACATGGTGGCCCTCTCAGGGGCGCACACAATGGGGAAAGCAAGATGCTCGACATTCACCTCAAGGCTAACTGGGAGCAGCAACTCAAACGGTCCGGAAATTAACATGAAATTCATGGAGTCACTGCAGCAGCTATGCTCAGAATCTGGCACCAACGTGACGCTAGCACAACTTGACCTTGTGACGCCTGCGACATTTGATAACCAGTACTATGTCAACCTTCTATCTGGTGAGGGACTGCTTGCATCCGACCAGGCACTTGTGTCCGGAGATGATCAGACACGACGAATTGTAGAATCCTATGTGGAGGACACAATGATCTTCTTTGAGGATTTCAGGAAATCCATGTTGAAGATGGGAAGTTTGGGGCCATTGACTGGTAATAACGGTGAGATCCGGAGGAACTGTAGGGCTTGTGTTATGAAAATTAATGATATATGA 840 48.21 MAASLLRLHFHDCFVNAILQGCDASVLLDDVGSFVGEKTAAPNLNSLRGFEVIDEIKSVLESVCPRTVSCADILAITARDSVVLSGGLGWDVQKGRRDSLSASKAAANNNIPGPNSSVATLVAKFQSVGLTLNDMVALSGAHTMGKARCSTFTSRLTGSSNSNGPEINMKFMESLQQLCSESGTNVTLAQLDLVTPATFDNQYYVNLLSGEGLLASDQALVSGDDQTRRIVESYVEDTMIFFEDFRKSMLKMGSLGPLTGNNGEIRRNCRACVMKINDI* 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 524036 525474 - Vvi5g47 Vvi5g47 786189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g47 279 CDD secretory_peroxidase 1 271 IPR033905 GO:0004601|GO:0042744
Vvi5g47 279 Gene3D - 1 271 - -
Vvi5g47 279 PANTHER PEROXIDASE 72-RELATED 1 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g47 279 ProSiteProfiles Plant heme peroxidase family profile. 1 273 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi5g47 279 ProSitePatterns Peroxidases active site signature. 2 13 IPR019794 GO:0004601
Vvi5g47 279 PRINTS Plant peroxidase signature 4 24 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g47 279 PRINTS Plant peroxidase signature 48 61 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g47 279 PRINTS Plant peroxidase signature 67 77 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g47 279 PRINTS Plant peroxidase signature 86 101 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g47 279 PRINTS Plant peroxidase signature 133 145 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g47 279 PRINTS Plant peroxidase signature 190 205 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g47 279 PRINTS Plant peroxidase signature 206 223 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g47 279 PRINTS Plant peroxidase signature 247 260 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g47 279 Pfam Peroxidase 1 237 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi5g47 279 PRINTS Haem peroxidase superfamily signature 2 16 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi5g47 279 PRINTS Haem peroxidase superfamily signature 68 85 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi5g47 279 PRINTS Haem peroxidase superfamily signature 86 98 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi5g47 279 PRINTS Haem peroxidase superfamily signature 134 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi5g47 279 PRINTS Haem peroxidase superfamily signature 192 207 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi5g47 279 Gene3D Peroxidase, domain 2 112 253 - -
Vvi5g47 279 ProSitePatterns Peroxidases proximal heme-ligand signature. 134 144 IPR019793 -
Vvi5g47 279 PANTHER PEROXIDASE 40 1 271 - -
Vvi5g47 279 SUPERFAMILY Heme-dependent peroxidases 1 271 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g47 K00430 - vvi:100249955 514.998