Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g470 ATGCTGTCGAATCACTTACAGAACGGAATCGAGACTGCGAGGTTAGTGTGGTCTCGGTTGCCCAACTCCGATGATGAGGCGCTGGACGAGGTAGGTCTCTCCAAGAAGAGTGATGGAAGCCGTTCTGAGAGCCTTGATTATGAAGTCATCGAGAATAATGCTTATCGGGAAGAGCAGGCGCAGAGAAGAAAGTTGATGGTTGGATATTATGTGGGCGTGAAGTGGTTCTTTGCCCTCCTTATTGGTATCGGTACTGGATTAGCTGCTGTTTTCATCAATATTTCGGTCGAGAACTTTGCTGGGTGGAAGTTTCAATTAACTTTTTCCATAATACAAAAATCATATGTGGCTGGATTCTTAGTATACATATTATTCAACTTGCTCTTGGTCTTTTCCTCTGTGTATATTGTCACGCAATTCGCACCAGCAGCAGCAGGATCTGGTATTCCTGAAATTAAGGGTTATTTGAATGGAGTTGATACTCATGGTATCCTTCTTTTCAGAACCTTGATTGGAAAGATATTCGGAAGCATTGGTTCTGTGGGAGGTGGTCTAGCCTTGGGAAAAGAAGGTCCTCTTGTTCATACTGGTGCCTGTATTGCTTCTCTGTTTGGTCAAGGTGGATCCACAAAATATCATCTTAGTTCAAGGTGGCTACAAGTTTTTAAGAGTGATCGGGATCGACGCGATCTTGTAACATGTGGGTGTGCAGCTGGAGTGGCTGCTGCTTTCAGAGCTCCAGTTGGAGGTGTATTGTTTGCATTGGAAGAGGTGACATCATGGTGGAGGAGTCAACTCATGTGGCGTGTCTTTTTTACTTCTGCTGTTGTGGCTGTTGTGGTGCGAACTGCAATGGGATGGTGTAAGAGTGGAAAGTGTGGACATTTTGGCTCAGGTGGCTTCATAATATGGGACATATCAGATGGTCAAGAGGACTACTCGTTTGAGGAATTATTGCCAATGGCAATTATTGGTGTTATTGGAGGTCTTCTTGGAGCCTTGTTCAACCAGCTTACTATTTATATTACTTACTGGCGCCGAAATTATTTGCACAAGAAAGGGAGCCGAGTGAAGATGATTGAAGTCTGCCTTGTGTCCCTGATAACTTCAGTTATTTCCTTTGGATTGCCACTTCTAAGAAAATGCAGTCCATGCCCTGAAGTAGAACTTAATTCTGGCATTGAATGCCCCCGTCCTCCAGGGATGTATGGGAATTATGTAAATTTCTATTGTGATAAGGACAACGAGTACAATGATCTTGCAACAATTTTCTTCAATACTCAGGATGATGCCATACGGAATTTATTTAGTGCAAAAACAATTCATGAGTACAGTGCACAAAGCCTATTGACCTTTTTGGTTATGTTTTATTCCTTAGCAGTGCTGACGTTTGGTACTGCTGTTCCAGCTGGTCAATTTGTTCCTGGAATAATGATAGGATCAACCTATGGGCGTCTTGTTGGCATGTTTGTTGTTAACTTCTACAAGAAGCTTAACATTGAAGAGGGAACATATGCTCTACTTGGAGCTGCTTCTTTTCTTGGAGGCTCAATGCGAATGACAGTGTCACTTTGTGTCATTATGGTTGAAATCACAAATAATCTGAAACTTTTACCTCTTATCATGCTTGTTCTTCTTATATCAAAGGCTGTTGGTGATGCCTTTAATGAAGGTTTGTATGAAGAACAGGCACGGTTGAGGGGCATTCCTTTACTCGAATCAAGACCTAAGTACCAAATGAGGAAAATGACTGCAAAAGAGGCCTGTGGCAATAAAAAGGTTGTATATTTCCCTCGTGTTGTTAAGGTTGCGGATGTAGTTTCTATTTTGCGAAGCAACGAGCATAATGGTTTCCCTGTAATAGATCACACAAGAAATGGGGAAAGCCTTGTAATAGGACTCATGCTTCGAAGTCACTTATTGGTGCTTCTGCAGTCCAAGGTAGATTTTCAGCATAGCCCTTTGCCCTCTGATCCAAGAGGTGGAGGCAAGCCAATCAGGCACAATTTCACTGAATTTGCAAAACCTGTTTCCAGTAAAGGAATCTCCATAGATGATATTCATCTAAGTTCAGATGACCTGGAAATGTATATAGATCTTGCTCCATTTTTGAACCCATCCCCTTACGTTGTCCCTGAAGATATGTCTTTGTCAAAGGTATACAATCTTTTCCGCCAACTAGGATTGAGGCATATACTTGTTGTCCCCCGTGCCTCTCGTGTTATTGGTTTGATTACCAGAAAGGATTTGTTAATTGAGGATAATGAGAATTCAGAGACAGTGGAGCTTCAATCGACTAGTGTAAGAGCTCGACGGCAAGATAGGAAAGCATCTGTGAGGGAAGCAGATGCAGAACACCCACTTCTGAATGGTCTTCTGGTGAAAGGGTATTCATCAAGCTGA 2403 42.41 MLSNHLQNGIETARLVWSRLPNSDDEALDEVGLSKKSDGSRSESLDYEVIENNAYREEQAQRRKLMVGYYVGVKWFFALLIGIGTGLAAVFINISVENFAGWKFQLTFSIIQKSYVAGFLVYILFNLLLVFSSVYIVTQFAPAAAGSGIPEIKGYLNGVDTHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLFGQGGSTKYHLSSRWLQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAVVAVVVRTAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMAIIGVIGGLLGALFNQLTIYITYWRRNYLHKKGSRVKMIEVCLVSLITSVISFGLPLLRKCSPCPEVELNSGIECPRPPGMYGNYVNFYCDKDNEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYSLAVLTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEEQARLRGIPLLESRPKYQMRKMTAKEACGNKKVVYFPRVVKVADVVSILRSNEHNGFPVIDHTRNGESLVIGLMLRSHLLVLLQSKVDFQHSPLPSDPRGGGKPIRHNFTEFAKPVSSKGISIDDIHLSSDDLEMYIDLAPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHILVVPRASRVIGLITRKDLLIEDNENSETVELQSTSVRARRQDRKASVREADAEHPLLNGLLVKGYSSS* 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4831092 4846705 + Vvi5g470 Vvi5g470 786612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g470 800 Pfam Voltage gated chloride channel 130 552 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi5g470 800 Pfam CBS domain 705 751 IPR000644 -
Vvi5g470 800 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 4 791 - -
Vvi5g470 800 CDD ClC_6_like 43 572 - -
Vvi5g470 800 PRINTS Chloride channel signature 142 159 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi5g470 800 PRINTS Chloride channel signature 173 192 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi5g470 800 PRINTS Chloride channel signature 237 256 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi5g470 800 PRINTS Chloride channel signature 468 488 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi5g470 800 PRINTS Chloride channel signature 503 519 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi5g470 800 PRINTS Chloride channel signature 521 540 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi5g470 800 PRINTS Chloride channel signature 559 573 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi5g470 800 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 4 791 - -
Vvi5g470 800 CDD CBS_pair_voltage-gated_CLC_euk_bac 591 751 - -
Vvi5g470 800 PRINTS Plant CLC chloride channel signature 48 56 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi5g470 800 PRINTS Plant CLC chloride channel signature 258 266 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi5g470 800 PRINTS Plant CLC chloride channel signature 272 282 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi5g470 800 PRINTS Plant CLC chloride channel signature 290 297 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi5g470 800 PRINTS Plant CLC chloride channel signature 420 436 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi5g470 800 SMART cbs_1 707 755 IPR000644 -
Vvi5g470 800 SMART cbs_1 593 645 IPR000644 -
Vvi5g470 800 Gene3D Clc chloride channel 68 573 - -
Vvi5g470 800 ProSiteProfiles CBS domain profile. 704 760 IPR000644 -
Vvi5g470 800 SUPERFAMILY Clc chloride channel 54 574 IPR014743 -
Vvi5g470 800 Gene3D - 577 758 IPR046342 -
Vvi5g470 800 SUPERFAMILY CBS-domain pair 577 751 IPR046342 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g470 K05016 - vvi:100261408 1479.92