Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g474 ATGGACAGAAACAGGGAAGCCAGAAGAGCCAGTATGGGAACCTCAAACGGCTTGTCCAGACGAAGGCACAGAAGTAGCAGTCTCAGAGACTCTCCAGAAGAGGATGGAGCGGTGGAGCTGCCGGAAACGGCGAGGTTACGGGATCGGGGAAGCAAGAAGGATCGAGATCGTGAGAGAGATCGAGATCGAGATCGGTCCAGTCGGAGCAAAAGGAGAAGAGGCGATAGGTTGATGCACGGGAGCAATAGAGAAGATGGTGGAGAGGAGAGTACGGAGGAGAGTGTAAATGATGAGGAGGAGGAGGATGAAGATGATGCCGGAGCCGTCAGGATGCTACCGCCGAATCCGACGTCCTTGTCTTCATCCATGTCTAATCATCAGCACCGGAAGAGTTATCCACCGGCCAAGGTTGTTAGAGCGCCGCCGGTGTGGAAGGCCGCTGACGAGATGATCGGTGTGTCGGTTCCGAGAAAAGCTCGCTCAGCATCTACGAAGAGGTCGCATGAATGCTGGGCTTCGGGTGTTGGAGGAGTGCCGGGGGAGCAAATTCACCGGCAAGCATCCACGTCGCCGGTGAGACCAAACCTAGCTGCTTCAACGGCGGCGGTAGCGGCTTCGCCGGCTTCAATCTCTCCTTCTTCTTCTAATGTCTCAATTCGGAAGAAGATGAAGCCCAATGGACCAAAGCTGCGTCCGCCGAAATCATCATCCAAGGCTTCTTCCTCAATTCAGGAGGATATCGAGATTGAGGTGGCGGAGGCGTTGGCCGTGATGAGACAGTCGCAGGGACCCTCTAAGCAAGAAATCATGGCAAACGATTCACTAAAGTTTGATTCTCGAGAGGTGAATAAATCGACTAATGAAGCGAAATCCAGAGTTTCTTCGCCGATCTCCAATTCTCCTTCTTCCGCCCAACAGTCATCTTCTATGCTGCCGCAAAATTCTAACTCCTCTGCACCTCCCTTGTCCGCCGTTGCACCTAAGAGGAAGAGACCGCGACCTAGGCACGAAGATGAGAATCCGGCGATTTTCGGCGTGCGGAACAGCCCCATTTCTTCAACAGCCAAGGTTGACATCGATCAGCCTGCCAAGATCGAATCAACATCTCCCAATTTGGAGAAAAACCCAGGATCCGCCAACGAAAATGGGGGAGTTTCGTACGATTTGATGAACTCCCAGTCTGTACCTGCATCGTCGGAGCCGCAACCGGAGTCATTGAGGCTAGGGGATTCAAAACCTTTGACTGAAGAAGCTGAGAGTCGAGATGTGGGTGTGACCAAGGAGGAACCATCTTCGCCCGAAAAGGAATCTCCTCTCCCCAAATTGGATGATGATCGTCAAGATGCGACAGGGACTAAAGCGAACTCAACAATTTCTGACGTTGAGAAACAGCGAGAAGAGAAGTTCCAGATAGATCTAATGGCTCCTCCTCCCCAGATGAGATCGTCTCCAGAAAGGGACGGTGAGATCAATTTTGTTGCAGCAGATCCCAAACCTATGGTCTCTGACATGGATACTGTGAGTAGGCCAGCCTTGATGTCTTGCAAGGATGAGGCAATGAATGCGGAACCTGAGGAGAAGAAGGCAAAATCCATAGTTGACGAAGCTGAACCACATAAGTCAATTGTTAACAAGGAGAGAATTATTGACCTCCAGCTTGATTTGGAGAAGCATGATCGTGATACTGGCAATGGTAGTGTCGGTAGCAGCAAGCTAAACCAGCATACTCCGAAACAACTACAGCAACCGAGAGCTCTGAAAGAAGAACAGAACACTGAGAAAACTGCACAATCGTCCGGCTCTCTACCTTTGCCAATGTCTGTAGCTAGCTGGCCTGGCGGGCTTCCTCCTATGGGATATATGGCACCTCTACAAGGAGTTGTATCCATGGATGGGAGCACAGTCTCTTCAGCAGCGATACAGCCCCCGCATTTCCTTTTTTCTCAACCACGGCTTAAGAGGTGTGCAACCCATTGCCACATTGCTTGGAATATTTGCCAGCACCAGCAATTTACGAGGATGAACCCTTTCTGGCCAGCAGCAGCCGGCACCCCGTCTCTATTTGGTGCCAAGCCCTGCAATCTCAATGTTCTGCCCTCTGTAGACTTGCATGGGAACTTTCCAGGTAGGAATGCAAACCCTTTGCAGGACAAGGGACAGGGTCTCGCTATCTTTTCTGGTCATAGTGGGAAGGACAAAGGCTCTCAAGCTGGTAACCCTGTAGATGCTGCACAGAGGAAGCAGATTTTGCTTCAGCAAGCTTTACCCCCAGGGGCACCTAGCAGTATACTGCATGGTCCTTTCATCTTTCCTTTGGGCCAGCAACAAGCAGTGGTAGCAGCTGCTTCTGCACGACCTGGGTCTGTTAAGTCTCCTCCACCCACCAGCAGTGCTGCTTCATCTAGTGCATCCAATTCTGCTCCAGTGAGTGCCTCAACAACAGCAGCAGCCACCACCCCTTTCCCAGGCACAGCAACAGCCATGAGCTTCAACTATCCTAATTTGCCTGCCAATGATACTCAATACTTAGCAATATTGCCGAACAATGGCTATCCCTTCCCAATCCCTGCACATGTTGGAGGTCCACCTGCTTATAGAGGAACTCATGCTCAGGCAGTTCCCTTCTTTAATGGGCCTTTCTATTCTTCTCAGATGCTCCATCCCTCGCAGCTTCCGCAGCAGCAGCAGCAGCAACCAACCCAACAGCCGCAGCAAATTCAACATGGTCATCAAAATACAAGCATCTCCAGTGGTTCCTCATCATCCCAGAAGCATTTGCAGAATCACCCACAACAGCAGCAGCAGAGGCCACATGGCAGTGCCACCAGTTATGCAGCAGCCTCAGCAGCTACAGCAGGCCCATGTCCAACTACCACATCAAGCTCGCCAACTAGAAGCTGA 2901 51.43 MDRNREARRASMGTSNGLSRRRHRSSSLRDSPEEDGAVELPETARLRDRGSKKDRDRERDRDRDRSSRSKRRRGDRLMHGSNREDGGEESTEESVNDEEEEDEDDAGAVRMLPPNPTSLSSSMSNHQHRKSYPPAKVVRAPPVWKAADEMIGVSVPRKARSASTKRSHECWASGVGGVPGEQIHRQASTSPVRPNLAASTAAVAASPASISPSSSNVSIRKKMKPNGPKLRPPKSSSKASSSIQEDIEIEVAEALAVMRQSQGPSKQEIMANDSLKFDSREVNKSTNEAKSRVSSPISNSPSSAQQSSSMLPQNSNSSAPPLSAVAPKRKRPRPRHEDENPAIFGVRNSPISSTAKVDIDQPAKIESTSPNLEKNPGSANENGGVSYDLMNSQSVPASSEPQPESLRLGDSKPLTEEAESRDVGVTKEEPSSPEKESPLPKLDDDRQDATGTKANSTISDVEKQREEKFQIDLMAPPPQMRSSPERDGEINFVAADPKPMVSDMDTVSRPALMSCKDEAMNAEPEEKKAKSIVDEAEPHKSIVNKERIIDLQLDLEKHDRDTGNGSVGSSKLNQHTPKQLQQPRALKEEQNTEKTAQSSGSLPLPMSVASWPGGLPPMGYMAPLQGVVSMDGSTVSSAAIQPPHFLFSQPRLKRCATHCHIAWNICQHQQFTRMNPFWPAAAGTPSLFGAKPCNLNVLPSVDLHGNFPGRNANPLQDKGQGLAIFSGHSGKDKGSQAGNPVDAAQRKQILLQQALPPGAPSSILHGPFIFPLGQQQAVVAAASARPGSVKSPPPTSSAASSSASNSAPVSASTTAAATTPFPGTATAMSFNYPNLPANDTQYLAILPNNGYPFPIPAHVGGPPAYRGTHAQAVPFFNGPFYSSQMLHPSQLPQQQQQQPTQQPQQIQHGHQNTSISSGSSSSQKHLQNHPQQQQQRPHGSATSYAAASAATAGPCPTTTSSSPTRS* 967
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4894749 4899096 + Vvi5g474 Vvi5g474 786616

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g474 966 MobiDBLite consensus disorder prediction 1 136 - -
Vvi5g474 966 MobiDBLite consensus disorder prediction 709 741 - -
Vvi5g474 966 MobiDBLite consensus disorder prediction 114 129 - -
Vvi5g474 966 PANTHER PROTEIN TIME FOR COFFEE 1 959 IPR039317 GO:0042752
Vvi5g474 966 MobiDBLite consensus disorder prediction 882 966 - -
Vvi5g474 966 MobiDBLite consensus disorder prediction 783 809 - -
Vvi5g474 966 MobiDBLite consensus disorder prediction 23 89 - -
Vvi5g474 966 MobiDBLite consensus disorder prediction 789 809 - -
Vvi5g474 966 MobiDBLite consensus disorder prediction 288 322 - -
Vvi5g474 966 MobiDBLite consensus disorder prediction 183 221 - -
Vvi5g474 966 MobiDBLite consensus disorder prediction 90 106 - -
Vvi5g474 966 MobiDBLite consensus disorder prediction 156 245 - -
Vvi5g474 966 MobiDBLite consensus disorder prediction 410 450 - -
Vvi5g474 966 MobiDBLite consensus disorder prediction 273 287 - -
Vvi5g474 966 MobiDBLite consensus disorder prediction 565 605 - -
Vvi5g474 966 MobiDBLite consensus disorder prediction 881 966 - -
Vvi5g474 966 MobiDBLite consensus disorder prediction 559 605 - -
Vvi5g474 966 MobiDBLite consensus disorder prediction 364 405 - -
Vvi5g474 966 MobiDBLite consensus disorder prediction 259 486 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g474 - - - vvi:100256257 1538.86
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g474 Vvi7g103 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g474 Blo01g00128 Blo12g00324 . Bda08g00233 Bpe04g00837 . Bma04g00791 Bma05g01112 Cmo08g01126 Cmo17g00232 . . . . . . . . . . . . . . Cla06g00571 Cam06g0610 Cec06g0611 Cco06g0617 Clacu06g0597 . Cre06g1358 Cone14ag0842 . . . . . . . . . . . Bpe05g00906 . . . . . . Cma08g01150 Cma17g00246 Car08g01031 Car17g00220 Cpe12g00204 Cpe17g00142 Bhi12g01725 . . Lac12g2296 . . . . . . . . . . Lsi09g01331 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003917 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 45