Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g478 ATGGATTTCTGCGGCAAGTCTCTTCGAGATTCCACTTCTCCCTTTGATTGCCTTGTTTTCGATTTGGACGATACATTATACCATTCAAAGACAGGAATTTCCGAAGCTTGCAAACGAAACATAGAAGAATTTCTAGTTCAGAAATGCGGATTTGGAGAAACAAAAGCTTCAAGTCTCCGAGTCGAGCTCTTCAAAAATTACGGCAGCACTCTAGCCGGTTTGCGGGCATTAGGCTATAACATCGATGCTGATGATTACCACAGTTTCGTGCACGGAAGACTGCCGTATGAATTGATCAAACCTGATTCACAACTCCGTAGCCTTCTGAGAAGCATCGCTCTCAGAAAAATTATTCTCACCAATTCCGATCGAAACCATGCGATTAAGGTATTGGACAGGCTGGGATTGCAAGATTGCTTCGATCAGATCATTTGCTTCGAGACAATGAATCCGAACCTCCCGAAATCGACTCGCCTTGATGAGTTTCCGGTTATTCTGAAACCATCATTGGACGCCATGAAAATCGCCCTTGATGCTGCCAATGTCAATCCTCCTCGTACGCTGTTCCTCGACGACAACGTCCGCAATATTGCTGCCGGAAAAGCTTTGGGCCTACGAACCGTTTTGGTCGGAAAAACAATGAAGACCAAAGAAGCAGATTATGTACTGGAGACGGTGCACAATCTTGCGCAAGTAATTCCTGAAATATGGCTAGGTGGGAAAGACGGCGAGGATCAGAGAATCAAGCGTACAGGAAGCGAACTGGATGCCACTCTCCCAACCACCCCCGTCGGTGCTTAA 801 46.19 MDFCGKSLRDSTSPFDCLVFDLDDTLYHSKTGISEACKRNIEEFLVQKCGFGETKASSLRVELFKNYGSTLAGLRALGYNIDADDYHSFVHGRLPYELIKPDSQLRSLLRSIALRKIILTNSDRNHAIKVLDRLGLQDCFDQIICFETMNPNLPKSTRLDEFPVILKPSLDAMKIALDAANVNPPRTLFLDDNVRNIAAGKALGLRTVLVGKTMKTKEADYVLETVHNLAQVIPEIWLGGKDGEDQRIKRTGSELDATLPTTPVGA* 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4948288 4950406 - Vvi5g478 Vvi5g478 786620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g478 266 Pfam Haloacid dehalogenase-like hydrolase 18 210 IPR041492 -
Vvi5g478 266 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 10 257 - -
Vvi5g478 266 Gene3D - 99 244 IPR023214 -
Vvi5g478 266 PANTHER HYDROLASE, SUBFAMILY IA, VARIANT 3, PUTATIVE-RELATED 10 257 - -
Vvi5g478 266 Gene3D - 7 98 - -
Vvi5g478 266 SUPERFAMILY HAD-like 14 236 IPR036412 -
Vvi5g478 266 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 167 210 IPR006439 -
Vvi5g478 266 SFLD C1.5.3: 5'-Nucleotidase Like 10 237 IPR010237 -
Vvi5g478 266 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 10 237 - -
Vvi5g478 266 TIGRFAM Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 16 210 IPR010237 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g478 K07025 K07025; putative hydrolase of the HAD superfamily - vvi:100263185 534.258
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g478 . . Bda03g00891 . Bpe04g00835 . Bma04g00789 . Cmo08g01123 Cmo17g00228 . . . . . . . . . . . . . . Cla06g00575 Cam06g0614 Cec06g0615 Cco06g0621 Clacu06g0601 Cmu06g0594 Cre06g1362 Cone14ag0844 . . . . . . . . . . . . . . . . . . . Cma17g00241 Car08g01029 Car17g00218 Cpe12g00202 Cpe17g00144 Bhi12g01720 . . . . . . . . . . . . . Lsi09g01328 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003737 1 2 0 1 1 2 2 2 2 1 2 2 1 1 1 2 2 1 2 2 1 1 1 1 1 2 1 6 1 1 46