Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g48 ATGGAGGAGAAAGAGCAAGTGAAGACTGAGAATTCGATGGCTAATTCAACATTTTCCGATCAGATTCCGGCGAGTTGTGCTTTTTCTTCAAGCATCTTTGACATGCCATGTGAAGTTGAAAAGGGCTCATTAGGCTTCATGGACCTGTTGGGCATCCAAGACTACAGTCCTTCTCTATTCGATTTGCTTCAGCCTCCATTGGCGCCGCACCCCCTCACTTCACCGGCTTCCTCAGCTCCGCCGGAGTCGTCGGAGGTTGTGAACGCTCCGGCCACCCCTAACTCCTCGTCGATCTCTTCCTCGTCGACCGAAGCAGCGAATGATGATCAGACTAAAGCGGCGGAGGAGGAAGAGCAAGATCAGGAGAAGAATAAGCAACAGTTGAAACCCAAAAAGAAGAACCAAAAGAGGCAGAGAGAGCCGAGATTTGCGTTCATCACCAAGAGCGAAGTTGATCATCTTGACGATGGATACAGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAGGAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGAGCGATCCTCCGATGATCCCACCACTGTTGTTACTACCTATGAAGGTCAGCACACTCATCCCTGTCCAGTGATGCCCCGTGGAAGTCTTGGGATTCCGCCGGAAGCTGTCACCTTCAGTGCAGCTGCTGCTTCCTCATTCGCCATGCCACAGCCTCAGTATCAGCAGCAGCAGCAACCCTATTTCAATAACTCTTCTCTTTCTTTGAACTTCAACCACATGAATTCCTCCTCCATTAACCCCACTTTCCTCCATGAGAGACGGCTCCGTCCTTCTCCAGCTTCTCTGCTGAGAGATCATGGACTTCTTGAGGACCTCCTGCCGTCCCAGATGTTTAAGGAGCCTAAAGAGGAGTAG 930 50.97 MEEKEQVKTENSMANSTFSDQIPASCAFSSSIFDMPCEVEKGSLGFMDLLGIQDYSPSLFDLLQPPLAPHPLTSPASSAPPESSEVVNAPATPNSSSISSSSTEAANDDQTKAAEEEEQDQEKNKQQLKPKKKNQKRQREPRFAFITKSEVDHLDDGYRWRKYGQKAVKNSPFPRSYYRCTTAACGVKKRVERSSDDPTTVVTTYEGQHTHPCPVMPRGSLGIPPEAVTFSAAAASSFAMPQPQYQQQQQPYFNNSSLSLNFNHMNSSSINPTFLHERRLRPSPASLLRDHGLLEDLLPSQMFKEPKEE* 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 530083 531773 - Vvi5g48 Vvi5g48 786190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g48 309 MobiDBLite consensus disorder prediction 109 128 - -
Vvi5g48 309 Gene3D WRKY domain 138 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi5g48 309 MobiDBLite consensus disorder prediction 70 144 - -
Vvi5g48 309 SUPERFAMILY WRKY DNA-binding domain 146 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi5g48 309 MobiDBLite consensus disorder prediction 1 20 - -
Vvi5g48 309 PIRSF WRKY_txn_fact_IIc 1 307 IPR017396 GO:0003700
Vvi5g48 309 PANTHER WRKY TRANSCRIPTION FACTOR 1 298 - -
Vvi5g48 309 SMART WRKY_cls 154 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi5g48 309 Coils Coil 107 127 - -
Vvi5g48 309 Pfam WRKY DNA -binding domain 155 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi5g48 309 ProSiteProfiles WRKY domain profile. 149 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi5g48 309 MobiDBLite consensus disorder prediction 77 108 - -
Vvi5g48 309 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 298 IPR044810 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g48 Vvi7g413 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14851 PF03106 WRKY 8.30E-27 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g48 - - vvi:100260212 490.345