Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g480 ATGGCTTCTCTGTTACAGCATCTGGGGCTCTTCTTGCTTTTCTTCGTCTCTTGCCACAGCCAGTACCACCCACTAGACTCTCTAACCCCATCTGAGTTCCACCAAGTTCAAGCCATTGTCAAGGGGTCGAACCCTGGCTCCAGCCTCAACATGACCTTCCAGTATGTTGGGCTGGACGAGCCAGACAAGTCCATCGTCCTCTCATGGCTCTCGAACCCCAACTCTACAACCCCACCTCCACCTCGCCGAGCCTTTGTTATCACTCGACTCCACAGCCAAACCCACGAAATCATCGTTGACTTGTCAACTCAGTCCATCATCTCCGACGAAGTCTACGGTGGACACGGCTACCCTTTGCTGACCAGCGAGGAACAAACGGCTGCATCCGTACTGCCTCTAACTTATCCACCATTTATAGCTTCAATTACGAAGAGAAGTCTCAAGTTATCCGATGTTGTTTGTTCTACCTTTACAGTGGGGTGGTTTGGAGAAGATAAGAGCAGAAGAGTGTTGAAAATACCGTGTTTTTACACGGACGGGACAGCTAATTTATACATGAGACCGATAGAAGGGGTAACAATAGTAGTTGATCTTGATGATATGAAGATAATCGAATACTATGACAGATTAATGGTTCCGGTGCCGGAAGCGGAAGGAACGGAGTGCCGATTGTCCAAGCAGAATCCCCCATTTGGTCCTCCCCTAAACGGTGTGTCGGCCATGCCACCAGATGGACCTGGATTCAAGATCGATGGGCACAATGTCAGGTGGGCTAACTGGGACTTCCATATAAGCTTTGATGCACGAGCGGGTCTAATCATATCACTTGCATCAATTTATGATCTCCAGAAGGGCACATTTCGTCAAGTGTTATATAGAGGACACGTATCCGAGCTCTTTGTACCATATATGGATCCAACTGAGGAATGGTACTATAGAACCTATTTCGATGAAGGTGAATTTGGGTTGGGTATATGCACAGTCCCACTTCAACCAATGCTAGATTGCCCTCCGAATGCAGTATTCACGGATGGGTATTATGCTAGCCAAGACGGCAAACCAATGAGTATATCAAATGCTTTTTGCGTATATGAACAAGAAGCAGGAAGAATCATGTGGCGTCATACTGAGACTGACATTCCAGGAGAAGAGATAAAGGAGGTGAGGCCAGAAGTGAGCCTAGTAGTAAGGATGGTCGTGGCACTCACCAACTATGACTATATACTTGATTGGGAATTCAAGCCTAGCGGCTCCATCAAATTTGGGGTGGGGTTAACTGGTATACCGGCAGTGAAAGGGGTATCATACACTCACACAGATCAGATAAAGGAGGATGTTTATGGCACACTGTTGGCACCTAACGCTATTGGTGTAAACCATGATCACTTCTTCACATACCGTCTTGATCTCGATGTAGATGGGGATGCCAACTCCTTTGTCAAGGCCAATTTGGAAACAAAGAGAGTAACAGACAATAGTTCACCGAGGAAGAGTTATTGGACGGTTGTGAGTGAGACTGCTAAAACTGAATCTGATGCACAAATTCAACTACGATTGAAGCCAGTTGAGCAAATAGTGGTGAATCCTAATAAGAAAACCAAGCTTGGGAACTATGTTGGTTATCGCCTAATTCCAGGGTCATTATCTAGTCCGCTTCTGTCAGATGATGACTACCCGCAAATTCGTGGTGCCTTCACGAAGTATGATGTTTGGATCACTCCATATAACAAGTCTGAAAAATGGGCAGGAGGGTTGTATATGGACCAGAGTCGAGGGGATGACACCTTAGCTGTTTGGAGCCAGAGGAATAGGGAGATTGAAAACAAAGACATTGTGTTGTGGTACACAATAGGATTTCACCATGTTCCTTGCCAAGAAGATTTTCCAGTCATGCCAACATTGAGTGGTGGATTTGAGCTCCGACCCACCAATTTCTTTGAGAACAATCCTGTGTTGAAAACAAAACCGCCTACTCCTGTGTCTTGGCCTAATTGCACCCACTAG 2004 46.06 MASLLQHLGLFLLFFVSCHSQYHPLDSLTPSEFHQVQAIVKGSNPGSSLNMTFQYVGLDEPDKSIVLSWLSNPNSTTPPPPRRAFVITRLHSQTHEIIVDLSTQSIISDEVYGGHGYPLLTSEEQTAASVLPLTYPPFIASITKRSLKLSDVVCSTFTVGWFGEDKSRRVLKIPCFYTDGTANLYMRPIEGVTIVVDLDDMKIIEYYDRLMVPVPEAEGTECRLSKQNPPFGPPLNGVSAMPPDGPGFKIDGHNVRWANWDFHISFDARAGLIISLASIYDLQKGTFRQVLYRGHVSELFVPYMDPTEEWYYRTYFDEGEFGLGICTVPLQPMLDCPPNAVFTDGYYASQDGKPMSISNAFCVYEQEAGRIMWRHTETDIPGEEIKEVRPEVSLVVRMVVALTNYDYILDWEFKPSGSIKFGVGLTGIPAVKGVSYTHTDQIKEDVYGTLLAPNAIGVNHDHFFTYRLDLDVDGDANSFVKANLETKRVTDNSSPRKSYWTVVSETAKTESDAQIQLRLKPVEQIVVNPNKKTKLGNYVGYRLIPGSLSSPLLSDDDYPQIRGAFTKYDVWITPYNKSEKWAGGLYMDQSRGDDTLAVWSQRNREIENKDIVLWYTIGFHHVPCQEDFPVMPTLSGGFELRPTNFFENNPVLKTKPPTPVSWPNCTH* 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5040288 5043717 + Vvi5g480 Vvi5g480 786622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g480 667 Gene3D - 119 212 - -
Vvi5g480 667 SUPERFAMILY Amine oxidase N-terminal region 116 222 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi5g480 667 Pfam Copper amine oxidase, enzyme domain 241 652 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi5g480 667 SUPERFAMILY Amine oxidase catalytic domain 226 661 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi5g480 667 Gene3D Copper amine oxidase, catalytic domain 248 664 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi5g480 667 Gene3D - 22 118 - -
Vvi5g480 667 Pfam Copper amine oxidase, N2 domain 23 110 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi5g480 667 PANTHER AMINE OXIDASE 13 659 - -
Vvi5g480 667 Pfam Copper amine oxidase, N3 domain 118 214 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi5g480 667 SUPERFAMILY Amine oxidase N-terminal region 20 117 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi5g480 667 PANTHER COPPER AMINE OXIDASE 13 659 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi5g480 667 ProSitePatterns Copper amine oxidase copper-binding site signature. 616 629 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g480 K00276 AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21] - vvi:100259696 1361.28
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g480 . Blo12g00326 . . . . Bma04g00788 . . Cmo17g00227 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01716 Tan06g2527 . Lac12g2288 Hepe03g0191 . Lcy13g0276 . . . . . . . Lsi09g01326 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97