Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g481 ATGTGTACCGCACGAAGGAGTCTTCTTTTTCCGTTGTGGACGTCCATGATATGCATGCTCCACTATTGGCTCTATGGGGCTAACATGTACCCCTCTAGGAGCTCGACAACCACGTCTCCTATCACGTCCTCGACCACGATCATTCTTTTGTCCTTGCTCAGCATGACAGTGGCAGCTACCATTCTTCTTTTGTTGTCTCTTCTACTGGTATACTCCTTGCTTGGCTCCCATGCCCAAACACCTGAAAACATATCCTTGGGATCTGGCCTCACCACCACCACTGATTCAACTTGGCTCTCACCTTCAGGGGATTTTGCATTTGGATTCTATCCCCTTGATAGCGGCCTCTTCCTTCTTGGAATTTGGTTCAATAAAATCCCTGAAGAAACCCTCGTTTGGTCAGCTAATCGAGATAATCCCGCTCCAGAGGGATCCACTATCAACCTAACAGCATCTGGCTATCTCTTGCTGACATACCCCAATGGATCATTAGATCACATCTACGAGGACGCTGCTGCAAGCTCAGCTTCCATGTTAGACAACGGCAACTTTGTCTTATGGAGCTCTGTTTCGAGGGTCCTCTGGCAGAGCTTCGAACATCCAACAGACACCCTCTTACCGGGACAAACGATTCCTGCCGGAGACACCAGGCTTTTCTCCAACACGAATGGAACCGTGGACTACTCAAAGGGAAATTTCCAGCTGGAGGTGCAGTCCGTCGATGGAAATATGGGGCTGTTTGCATTCCGATTCTCAGATAGTGGTTACTGGTGGTCTAATACAACTCAACAGACAAACGTCAGTCTTGTTTTTAACGAGACTACCGCCTGCCTTCCTGGTTATTCTCTTATTGATCCCAATATCCCTTCCAAAGGATGCCGCCCAGATGTTCCTGTGGAACAGTGCGCAAACACCCCATCTGAGACAGAGTATCGTGTAGAAGTGATCGATGATGCTGATATTAAAAACGATATATTTGCAGAGTTGACTCGATTGTATGGTTATGATTTAGATGGATGCATAAAGGCAGTCCAGGATGATTGCTATTGCGTGGCAGCTACGTATACAACCGACAATGTTTGTCGCAAGAAAAGGATTCCTTTCATGAATGCCAGAAAGAGCATCCCTTCTACTACAGGGATAAAGGCCATCATCAAGGTGCCAGTGAAGATAGAGGATCCAATAAAGGGGACAAACAATTCAAGGCCTCAGGTTGTTGTGTTAGTATGCCTTTCAGTAGTCTCCTTTCTAGCTCTACTATTCGCTACAATTATCATCTATCAGAACCTTGTAGTGCCACGATTCGGATTAAGCAAACTAGCTCCAAGTACACAATCAGCAGACATCAACTTGAGGACATTCACATACCAGGAGCTGCATAAAGCGACAGATGGATTCAGAAACAGACTTGGAAGAGGAGCATCAGGGTCAGTTTACAGTGGGACTCTGCGCTTCGAAGATAAGGAGATGGAGATTGCTGTGAAGAAGCTGGAAAGAGTGATTGAACAGGGCGACAGAGAATTTTTGGCTGAGGTAAGGGCAATTGGCCAAACTCATCACAGAAATCTCGTCCGGCTGTTGGGATTCTGTAATGAGCAAAGCCACCGACTTCTGGTCTATGAGTTAATGAAAAATGGACCTCTGTCTAGTTTCCTATTCAGTAAGGGGGAGAAACCCTGCTGGGATCATAGAGCTGAGATAGTGCTTGCAATTGCAAGAGGCCTGCTATATCTGCATGAGGAATGTGAAACTCGGATCATCCACTGTGACATAAAGCCCCAGAATGTGTTACTCGATCAACACTACAATGCTAAGATTGCAGACTTCGGCCTCGCAAAGCTATTGAGGAAAGACCAGACCAGGACAAGCACCAACGCCAGAGGAACAATGGGATACATGGCACCGGAATGGCTCAAATGTGCTCCTGTTACAGCCAAAGTGGATGTCCACAGTTTTGGGGTGATGCTGCTGGAGATTATATGCTGCAGAAGGCACATAGAGTTGGACCGGATTGAGGAAGAGACTGAAGATGATGACCTCATCCTAACAGATTGGGTGCTAAATTGTCTGAGATTGGGAAAGCTAGAGGTGGTGGTGAAGCATGATCCAGAAGTACTGGGTGATTTCAAAAGGTTTGAGAGAATGGCAATGGTGGGGTTATGGTGTGTTAATCCCGACCCAATTCTCCGTCCAACAATGAAGAGGGTGATACAAATTCTTGTTTTAACAACCTTCATAATTGAAAATATTCTTTCGATAGTTGTCATTAATATCAGAAATATCGATATTAGACAAATCAATCTATCAATGAGATGA 2316 45.6 MCTARRSLLFPLWTSMICMLHYWLYGANMYPSRSSTTTSPITSSTTIILLSLLSMTVAATILLLLSLLLVYSLLGSHAQTPENISLGSGLTTTTDSTWLSPSGDFAFGFYPLDSGLFLLGIWFNKIPEETLVWSANRDNPAPEGSTINLTASGYLLLTYPNGSLDHIYEDAAASSASMLDNGNFVLWSSVSRVLWQSFEHPTDTLLPGQTIPAGDTRLFSNTNGTVDYSKGNFQLEVQSVDGNMGLFAFRFSDSGYWWSNTTQQTNVSLVFNETTACLPGYSLIDPNIPSKGCRPDVPVEQCANTPSETEYRVEVIDDADIKNDIFAELTRLYGYDLDGCIKAVQDDCYCVAATYTTDNVCRKKRIPFMNARKSIPSTTGIKAIIKVPVKIEDPIKGTNNSRPQVVVLVCLSVVSFLALLFATIIIYQNLVVPRFGLSKLAPSTQSADINLRTFTYQELHKATDGFRNRLGRGASGSVYSGTLRFEDKEMEIAVKKLERVIEQGDREFLAEVRAIGQTHHRNLVRLLGFCNEQSHRLLVYELMKNGPLSSFLFSKGEKPCWDHRAEIVLAIARGLLYLHEECETRIIHCDIKPQNVLLDQHYNAKIADFGLAKLLRKDQTRTSTNARGTMGYMAPEWLKCAPVTAKVDVHSFGVMLLEIICCRRHIELDRIEEETEDDDLILTDWVLNCLRLGKLEVVVKHDPEVLGDFKRFERMAMVGLWCVNPDPILRPTMKRVIQILVLTTFIIENILSIVVINIRNIDIRQINLSMR* 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5047103 5051884 - Vvi5g481 Vvi5g481 786623

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g481 771 SMART blect_4 89 201 IPR001480 -
Vvi5g481 771 Gene3D - 199 281 IPR036426 -
Vvi5g481 771 PANTHER SERINE/THREONINE-PROTEIN KINASE 274 741 - -
Vvi5g481 771 PANTHER SERINE/THREONINE-PROTEIN KINASE 59 276 - -
Vvi5g481 771 SUPERFAMILY Protein kinase-like (PK-like) 448 743 IPR011009 -
Vvi5g481 771 SMART serkin_6 464 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g481 771 CDD B_lectin 93 201 IPR001480 -
Vvi5g481 771 Pfam D-mannose binding lectin 130 211 IPR001480 -
Vvi5g481 771 Pfam Protein kinase domain 468 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g481 771 PIRSF SRK 271 751 IPR024171 GO:0004674
Vvi5g481 771 PIRSF SRK 53 276 IPR024171 GO:0004674
Vvi5g481 771 ProSitePatterns Protein kinases ATP-binding region signature. 470 496 IPR017441 GO:0005524
Vvi5g481 771 ProSiteProfiles Protein kinase domain profile. 464 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g481 771 ProSitePatterns Serine/Threonine protein kinases active-site signature. 586 598 IPR008271 GO:0004672|GO:0006468
Vvi5g481 771 ProSiteProfiles Bulb-type lectin domain profile. 83 199 IPR001480 -
Vvi5g481 771 Gene3D Transferase(Phosphotransferase) domain 1 543 746 - -
Vvi5g481 771 Gene3D - 80 198 IPR036426 -
Vvi5g481 771 Gene3D Phosphorylase Kinase; domain 1 446 542 - -
Vvi5g481 771 SUPERFAMILY alpha-D-mannose-specific plant lectins 117 261 IPR036426 -
Vvi5g481 771 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 274 741 - -
Vvi5g481 771 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 59 276 - -
Vvi5g481 771 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 274 740 - -
Vvi5g481 771 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 58 278 - -
Vvi5g481 771 PANTHER SERINE/THREONINE-PROTEIN KINASE 274 740 - -
Vvi5g481 771 PANTHER SERINE/THREONINE-PROTEIN KINASE 58 278 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g481 - - - vvi:100254587 922.539
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g481 . . . . . . . . . . . Cma14g01697 . Car14g01528 . . . Bhi01g00821 . . . . . Lcy11g1537 . . . . . . . . . . . Lsi05g01426 . . . . . . . . . . . . . Cmo14g01742 . . . . . . . . . . . . . Cla05g00552 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001427 0 3 0 0 0 4 2 3 3 1 2 4 2 1 5 1 4 1 1 4 0 4 3 2 7 6 3 2 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76666 PF00069 Pkinase 2.00E-47 CL0016 Vvi PK