Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g482 ATGGCTTCTCTAGTACAGCATCTGGGGCTCTTCTTGCTCTTCTTCCTCCCCTTGTCACTAGTCTCTTGTCACAGCCACCACCACCCACTAGACTCTCTAACCCCATCTGAGTTCCGCCAAGTTCAAGCCATTGTCAACGGGTCGAACCCTGGCTCCAGCCACAACGTAACCTTCCAGTATGTTGGGTTGGACGAGCCAGACAAGCCCGCCCTCCTCTCATGGCTCTCGAACCCCAACTCTACAACCCTACCTCCACCTCGCCGAGCCTTTGTTATCACTCGACTCCACAGTCAAACCCACGAAATCATTGTCGACTTATCGACTCAGTCCATCGTCTCCGACAAGGTGTACAGTGGACACGGCTACCCTTTGCTGACTAGCGAGGAACAAACGGCTGCATCTGAGCTGCCTCTAACTTATCCACCATTTATAGCTTCAATCAGGAAGAGAAAGCTCAAGTTATCCGATGTGGTTTGTTCTACCTTTACAGTGGGGTGGTTTGGAGAAGAAAAGAGCAGAAGAGTGTTGAAGATACTGTGTTTTTACACTGATGGGACAGCTAATTTATACATGAGGCCAATAGAAGGGGTAACAATAGTAGTTGACCTCGATGAGATGAAGATAACTGAATACCATGACAGATTAACGGTTCCGATGCCGGAAGCGGAAGGAACGGAGTACCGATTGTCGAAGCAGAAGCCCCCATTTGGTCCTCGTCTAAATGGTGTGTCTAGCATGCAACCAGATGGACCTGGATTCAAGATCGATGGGCACAATATCAGGTGGGCTAATTGGGACTTCCATGTAAGCTTTGATGCACGAGCCGGTCTAATCATATCACTCGCATCAATTTATGATCTTCAAAAACGCACATTTCGTCGAGTGTTATACAGAGGATACTTGTCTGAGCTCTTTGTACCATATATGGATCCAACTGAGGAATGGTACTATAAAACCTTTTTCGATTTAGGTGAATTTGGGTTTGGTCTTTGCACAGTCCCACTTCAACCATTAGCAGATTGCCCATCCAATGCCGTGTTCATGGATGGGTACTATGCTGGCCAAGATGGCAAACCAGTGAAAATATCAAATGCTTTCTGCATATTTGAACAACAAGCAGGAAGAATCATGTGGCGTCACACCGAGGTTGAGATTCCAGGAGAAGAGATAAGGGAGGTGAGGCCAGAAGTGAGCCTAGTAGTGAGGATGGTTGCAACAGTGGGCAACTATGACTACATACTTGATTGGGAATTCAAGCCTAGTGGCTCCATCAAACTTGGGGTGGGGTTAACTGGTATCCTAGAAGTGAAGGGGGTGTCATACACTCACACAAGTCAAATAAAGGAGGATGTTTATGGCACATTGTTGGCACATAACACTATTGGCGTAAACCATGATCACTTCTTGACATACCATCTTGACCTTGATGTAGATGGTGATGCCAACTCCTTTGTTAAGGCCAATCTGGAAACAAAGCGAGTAAAGGATAATATTTCACCAAGGAAGAGTTACTGGACAGTTGTGAGTGAGACTGCTAAAACTGAATCTGATGCACAAATTCAGCTGGGACTGAAGCCAGCTGAGTTAATAGTGGTGAATCCTAATAAGAAGACCAAACTTGGGAACTATGTTGGTTATCGTCTGATTCCAGGGTCATTATCTAGTCCTCTTCTATCAGATGATGATTATCCGCAAATTCGTGGTGCCTTCACGAAGTATGATGTTTGGATCACTCCATATAACAAGTCTGAAAAATGGGCAGGAGGGTTGTATATGGACCAGAGTCGAGGAGATGACACCTTAGCCGTTTGGAGCCAGAGGAATAGGGAGATTGAAAACAAGGACATTGTGTTATGGTACACAATAGGGTTTCATCATGTTCCTTGCCAAGAAGACTTTCCAGTGATGCCAACACTGAGCGGTGGATTTGAGCTGCGACCCACCAATTTCTTTGAGAGAAATCCTGTGTTGAAAACAAAACCTCCTACGTATGGGCACTGGCCTAATTGCACCACCAAACCCTAG 2025 45.88 MASLVQHLGLFLLFFLPLSLVSCHSHHHPLDSLTPSEFRQVQAIVNGSNPGSSHNVTFQYVGLDEPDKPALLSWLSNPNSTTLPPPRRAFVITRLHSQTHEIIVDLSTQSIVSDKVYSGHGYPLLTSEEQTAASELPLTYPPFIASIRKRKLKLSDVVCSTFTVGWFGEEKSRRVLKILCFYTDGTANLYMRPIEGVTIVVDLDEMKITEYHDRLTVPMPEAEGTEYRLSKQKPPFGPRLNGVSSMQPDGPGFKIDGHNIRWANWDFHVSFDARAGLIISLASIYDLQKRTFRRVLYRGYLSELFVPYMDPTEEWYYKTFFDLGEFGFGLCTVPLQPLADCPSNAVFMDGYYAGQDGKPVKISNAFCIFEQQAGRIMWRHTEVEIPGEEIREVRPEVSLVVRMVATVGNYDYILDWEFKPSGSIKLGVGLTGILEVKGVSYTHTSQIKEDVYGTLLAHNTIGVNHDHFLTYHLDLDVDGDANSFVKANLETKRVKDNISPRKSYWTVVSETAKTESDAQIQLGLKPAELIVVNPNKKTKLGNYVGYRLIPGSLSSPLLSDDDYPQIRGAFTKYDVWITPYNKSEKWAGGLYMDQSRGDDTLAVWSQRNREIENKDIVLWYTIGFHHVPCQEDFPVMPTLSGGFELRPTNFFERNPVLKTKPPTYGHWPNCTTKP* 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5055643 5059039 + Vvi5g482 Vvi5g482 786624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g482 674 SUPERFAMILY Amine oxidase N-terminal region 121 228 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi5g482 674 Pfam Copper amine oxidase, N3 domain 123 215 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi5g482 674 PANTHER AMINE OXIDASE 10 663 - -
Vvi5g482 674 Gene3D Copper amine oxidase, catalytic domain 253 668 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi5g482 674 Gene3D - 124 217 - -
Vvi5g482 674 Pfam Copper amine oxidase, N2 domain 28 115 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi5g482 674 ProSitePatterns Copper amine oxidase copper-binding site signature. 621 634 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi5g482 674 Gene3D - 26 123 - -
Vvi5g482 674 SUPERFAMILY Amine oxidase catalytic domain 231 667 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi5g482 674 PANTHER COPPER AMINE OXIDASE 10 663 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi5g482 674 ProSitePatterns Copper amine oxidase topaquinone signature. 399 412 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi5g482 674 SUPERFAMILY Amine oxidase N-terminal region 25 122 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi5g482 674 Pfam Copper amine oxidase, enzyme domain 245 657 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g482 K00276 AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21] - vvi:100244323 1370.14
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g482 . . . . . . Bma04g00787 . . Cmo17g00226 . . . . . . . . . . . . . . Cla06g00578 Cam06g0616 Cec06g0617 Cco06g0623 Clacu06g0603 Cmu06g0596 Cre06g1365 . . . . . . Chy05g00402 . . . . . . . . . Sed04g1901 . . . Cma17g00240 . . . Cpe17g00145 Bhi12g01715 Tan06g2526 Cmetu05g0015 Lac12g2287 Hepe03g0192 . Lcy13g0277 . . . . . . . Lsi09g01325 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97