Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g492 ATGAATTGCGTTACAGAGCTTGAACCAGATTATTCTGAGTTTGTTGAAGTTGATCCTACCGGTAGATATGGAAGGTACAATGAAATTCTTGGCAAAGGAGCTTCCAAGACAGTATACAGAGCCTTCGATGAGTATGAAGGGATTGAAGTAGCCTGGAACCAGGTGAAGCTTAATGATTTCCTGCAGAGTCCTGAAGAGCTGGAGAGGCTGTACTGTGAAATTCATCTGCTCAAGACCTTGAAACACAACAACATCATGAAATTCTACACTTCCTGGGTTGATCCTGCAAACAGGAACATTAATTTTGTGACAGAGATGTTCACCTCCGGTACTCTTAGACAGTATAGGCTAAAACACAGGAGAGTTAACATCAGAGCTGTGAAGCATTGGTGCAGACAGATCTTAAGGGGGCTGCTCTACCTCCACAACCATAAACCCCCTGTTATCCACAGAGATCTCAAGTGTGACAACATTTTTGTCAATGGCAACCAAGGGGAAGTCAAGATTGGTGATCTGGGGCTGGCTGCAATTCTTCGGAAATCCCATGCAGCTCACTGTGTTGGAACACCAGAGTTCATGGCCCCAGAAGTGTATGAAGAGGAGTACAATGAATTAGTTGACATCTATTCTTTTGGAATGTGCATCTTGGAAATGGTTACCTTTGAATATCCATACAGTGAATGCACCCACCCCGCTCAGATCTACAAGAAAGTTATCTCCGGTAAAAAACCAGATGCCCTTTACAAAGTGAAGGATCCTGAGGTGCGGCAATTTGTCGAAAAATGCTTAGCCACGGTGACTCTTAGGCTTTCTGCCAGGGAGCTTCTGAAGGACCCTTTTCTCCAAAGTGATGACTATGGGTCTGATTTGAGGCCAATAGAGTACCAGAGGGATTTGGGTGAAGTTGGCCCTCTCCCGAGACTACCTCACTATGGCATTCATCATATTGAGTTTGAAAGAAATGAAATTGATCTCTTCACTTATCAAGAGGATGAGCATTTGGAAAATGTTGATATCTCCATCGAAGGGAGAAAGAGAGATGATCATGGAATCTTTCTAAGGCTCAGAATTTCAGATAAAGAAGGTCGGGTTCGGAACATTTACTTCCCTTTTGATATGGAGACTGACACGGCACTGAGTGTTGCAATGGAAATGGTTTCTGAGCTGGATATTACCGACCAAGATGTGACTAAGATAGCAGATATGATAGATGATGAGATTGCTAGCCTGGTACCGGGTTGGAAGATGGGGCTTGGCATAGAGGAGAGCCAGAATTATGGCCATGATGCAAGTTTCTGTCACCATTTTCTTCAATGTTCAAGACAGGGATGTGCTGCTGTGCATGGCCGCTTTGAAGAGATCACTTACCGAGTTGAAGGAGTCATAAATATCGATAACCAAAGTGAATCCAATGCAAAGAACTCTTTTGCTCCCCTGGACGATTATGAGAATGAGATCAGGCAGGAATTGAGATGGCTGAAAGCAAAGTACCAAATGCAGCTGAGGGAGCTTAGAGATCAACAGTTAGGAGCCAAACCAAAATGGCTGAGTCTAACCCCAAATTCAGATAGCATGGAACACAGTAGAGATAACAAGGGGATGTGCCAATTTAGCATATCGAAGGCCCCATAA 1632 43.87 MNCVTELEPDYSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLNDFLQSPEELERLYCEIHLLKTLKHNNIMKFYTSWVDPANRNINFVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQILRGLLYLHNHKPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEEYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVRQFVEKCLATVTLRLSARELLKDPFLQSDDYGSDLRPIEYQRDLGEVGPLPRLPHYGIHHIEFERNEIDLFTYQEDEHLENVDISIEGRKRDDHGIFLRLRISDKEGRVRNIYFPFDMETDTALSVAMEMVSELDITDQDVTKIADMIDDEIASLVPGWKMGLGIEESQNYGHDASFCHHFLQCSRQGCAAVHGRFEEITYRVEGVINIDNQSESNAKNSFAPLDDYENEIRQELRWLKAKYQMQLRELRDQQLGAKPKWLSLTPNSDSMEHSRDNKGMCQFSISKAP* 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5145292 5148759 + Vvi5g492 Vvi5g492 786634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g492 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Vvi5g492 543 CDD STKc_WNK 22 281 - -
Vvi5g492 543 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 352 407 IPR024678 GO:0004674|GO:0005524
Vvi5g492 543 Gene3D Transferase(Phosphotransferase) domain 1 107 287 - -
Vvi5g492 543 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g492 543 Gene3D - 335 413 - -
Vvi5g492 543 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1-RELATED 1 466 - -
Vvi5g492 543 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1-RELATED 468 534 - -
Vvi5g492 543 MobiDBLite consensus disorder prediction 518 543 - -
Vvi5g492 543 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Vvi5g492 543 Gene3D Phosphorylase Kinase; domain 1 9 105 - -
Vvi5g492 543 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 466 - -
Vvi5g492 543 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 468 534 - -
Vvi5g492 543 Coils Coil 487 507 - -
Vvi5g492 543 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g492 543 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76667 PF00069 Pkinase 1.30E-49 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g492 K08867 - vvi:100240750 1014.22