Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g496 ATGAGAAGTGGTGATCGTTCGGGCGGTTTGGTGAAGAGTAGGAACGCCTCAGGATGTTTAATTATTAAAAAGAAAGGCGATGGGGTGAGTGGGGCTGGTTCTTCGGGTTCGCAGGGGTTATTAGAATCCAAGAAGGAGAAGAAGAGACCGCGATTGGTTCTTAGCGATTCGGGTTCGAGTGATGAACTGTTAGAATCTCGTCGGCCAAGGGTTCTATCTGGGAGTAGCCAAGCTGGTAATGGTGTAACTGTTTTTAAACAGGGCGTTGAAGAGAGAAATTTTGGTTGCAATGGTGTAGTCGAGAGAAAGAGAAGTAGGTTAGATGTCTTTGAGTTTGACGAGTATGACAGAATTGAGGGGAAAAAGCAGAGGAAGAAGGAACAGATGGATAATGGGGAAGTTGGAGGAAGAGGCTTTTTGGGTTCAAAGCAGGTGCTGCAAAGTAGCAGTCGAAGGGAATTTGAGACAGGTTCAAGCAGACAAGATATTGTGTATAGGAGAAAACATTCTTATTTTGGAAATACAAGTGGCTCATTAGGAGAAAGGAACAGGGGAACTGATTATTCTGAGACTAGCAGTTATGATCCCCAGGAAGCTGAAGGCATTAGACAGGTGTCTAGGCCTGTGGATAGCATGAAGAGGAACATATTGATTCGCCCTTCATCTTATTCAGAAACAAAACTTCATGAGAAACCAGGTTCATTTGTTGGAGCAGAGAAAAAACACCCGAACTTGAGAAAATCATTACCCACTAAGAAGAGTAAAGCCAGCTACTCAGGATCAGAGGACAGAAAGGAAGGAAAAGTTAAGCGTGGTAGTGGCACCGAGAAGCAATTATTACGTGAACGAATAAGGGGAATGCTTGTTAATGCAGGTTGGACAATCGATTATAGACCTAGAAGGAATAGAGACTACCTAGACGCTGTTTACATTAACCCCACAGGAACAGCGTACTGGTCCATCATCAAGGCTTATGATGCTCTCCAAAAGCAAATTGATGATGAGGAGAGTAAATCAAAACCTAAGGATGCAGATGACATTAAGCATGAAGAGAAACTAAGCTCATTCATAAAGCAGAATGGCAAAAAAATTGGCAGATGTACTTTGTTGGTTCGCAATTCTGGCAAGGGACTGAATTTGGAAACTGATGGCTTTGTTCCATATACTGGGAAACGAACTCTTCTGTCTTGGCTTATTGACTCTGGAACTGTGCAGTTAAGTGAGAAAGTGCAGTATATGAATCGCAGACGCACAAAAGTAATGCTGGAGGGATGGATCACAAGAGATGGAATTCATTGTAGATGCTGTAGTAAAATCCTCACAGTTTCAAAGTTTGAAATTCATGCAGGGAGCAAACTTCGTCAGCCATTCCAGAACATAGTTTTGGACTCTGGGGTTTCCCTTTTGCAGTGCCAGGTAGATGCATGGAATAGACAAGAGGAGTCTGAACGTAGTGGTTTCCACCCTATAGATGTTGATGGTGATGATCCTAATGATGACACTTGTGGTATCTGTGGAGATGGTGGGGATTTGATCTGTTGTGATGGGTGTCCCTCAACATTCCATCAGAGCTGCTTAAATATTCAGATGCTTCCATCTGGTGACTGGCACTGCCCTAATTGCACATGCAAATTTTGCGGAATGGCTGATGGGAGTAATGCTGAAGATGATACAACCGTCAGTGAGCTAGTTACTTGCAGTCTATGTGAGAAAAAATATCACACATCGTGCATTCAAGGGGTGGATGCTGTCCTTTCCGATACCAATAATCCATCCACTTCTTTCTGTGGACAGGGGTGCCGGGAGCTCTTTGAACATTTACAGAAGTTTATTGGGGTCAAACAAGAACTGGAGGCAGGGTTTTCATGGTCTCTCATTCATCGCACAGACCCAGGCTCAGATACATCTGTCCGAGGATTTCCACAAAGGGTGGAAAGCAATTCTAAGCTTGCTATTGCACTGACTGTTATGGATGAGTGCTTTTTGTCCATTGTTGACAGGAGGAGCGAGATTAATTTAATCCATAATGTTCTCTATAATCGTGGATCAAACTTTAATCGGCTGAACTACAGTGGTTTCTACACTGCAATTTTGGAGAGAGGTGATGAAATAATCTGTGCTGCATCAATCAGGATCCATGGAACCCAGTTAGCAGAGATGCCGTTCATTGGAACTCGCCATATATATAGGCGCCAAGGGATGTGCCGTCGGCTTTTTTGTGCTATTGAATCGGCTCTTTGCTCTCTCAAAGTTGAGATGCTAATTATTCCAGCTATATCCGAACTCATGCATACATGGACTGTAGGTTTTGGTTTCAATCCTCTTGAAGAATCCCATAAGCAAGAATTGAGGTCCTTGAATATGTTGGTGTTCCCGGGTACAGACATGTTACAGAAGCTGCTTCTGGAGCAAGAAACTGCTGATGGAAACATGACTGCTAGTCCAGGTACAAAGTCAGTTGAATCCAAAGGCAACAATTGTAATACACCTGATTTGGAAAATAAATCTGATATAGATTCATCCAATGGGCATGATTTATCCATCCATAATCATTCCATTTCGCAACATTCAAATGACAGAAATGACAATGTCTGTGCTTCTGACTCTATTTCCCTGACCCCAGCTGTTCCATTGACTAATCCTTCTATCATGAGTGGTGCTTCAGATGCTCTTCATGAACCTGAAATCCAAGGCTCTGGTGAGGAGACGAGATGTTCTAATTCTGAGTCCGGGGACAAGTTGAATGAAGCTACTGAAGCCAAGTGTCCTTCTCCCTCTTATGCAAGTTGCAATGTTCTTGAGATAGAAAAACATGTATTTGATTCTCCTGGCGAGGGTGATATGCATTCTCCTTCTGAGGACAAAGTCGGTGATGCTCGTGACCCAAATGTCCAAGTCCCTGGTGAGGGGACTATATGTTCTAGTTCTCAGTCAAGGAACAAACTAGGCAAACCTGGTAGTGACTTCAACTGTCTATCTGCTTCTGAAGCAAGTCATAATGGAAAAGCCATGGTGGATTCTCCTGTTGAAAGTAACAGTCGGCCCTCTGATGAGTGTGAAGATGGTAATGGTCTAGAAGTAAATGCTGAAGCCCCTGGTGAGGGGACCATTTGTTCTAACTCTCAGCCAAGTTACAAATTACCTGTATCTACTACAGGTATGGACTTTCTCCCTGCTTCTGAAGTGAGTCATGGCATCCTTGAGGTGGAAAAGCTAGTATCAGATTCTCTAGTTGAAGGAAATGTTCTGTCTTGTGCAGAGGGTGAAGCAGGTGATGCTCATGAAGTAAATACCCAGGTCTCTGGTAATGGGATTACAGGTTCTAATTCTTGCTTCAAGGACAAAGTAGCTGAACCTCCTAGTGATGTGAAGCCCCTCTCTCCCTCTGATGAGAGTTTCAATATCGAGTTCAAAAAACCTGTATTGGCTTCTCCTGTAGAGGTCAATATTCAGTCTTCCACCAAGGGTGAAGTAGATGATGCTCATGAAGTAGGTGATTCAGTTGCTTCTGTTGAACCTGTTTCAAGTGAAATTTCTGCTCAGAAAATAACTGAGGAAGTTGATAAAAATCAAAAACCTCTTCCTGTTTCTACTTTTGATGGTACTGATGAGAGTACTATACAGTCCAACTCCAATTTTAATAATCAGAGTGCATTTGAGATGGAAGGTAAATCACATGTGGCTTTGGAAGTTGCCTCTAATGCAAATGATTATGAAGAAAACCGGCTAAAGGTATCTGCTGAAAATTCAGGAACTGATGAGTGTGAAGGGAAAGCTGGATCTATTAGTGTTTAA 3795 42.79 MRSGDRSGGLVKSRNASGCLIIKKKGDGVSGAGSSGSQGLLESKKEKKRPRLVLSDSGSSDELLESRRPRVLSGSSQAGNGVTVFKQGVEERNFGCNGVVERKRSRLDVFEFDEYDRIEGKKQRKKEQMDNGEVGGRGFLGSKQVLQSSSRREFETGSSRQDIVYRRKHSYFGNTSGSLGERNRGTDYSETSSYDPQEAEGIRQVSRPVDSMKRNILIRPSSYSETKLHEKPGSFVGAEKKHPNLRKSLPTKKSKASYSGSEDRKEGKVKRGSGTEKQLLRERIRGMLVNAGWTIDYRPRRNRDYLDAVYINPTGTAYWSIIKAYDALQKQIDDEESKSKPKDADDIKHEEKLSSFIKQNGKKIGRCTLLVRNSGKGLNLETDGFVPYTGKRTLLSWLIDSGTVQLSEKVQYMNRRRTKVMLEGWITRDGIHCRCCSKILTVSKFEIHAGSKLRQPFQNIVLDSGVSLLQCQVDAWNRQEESERSGFHPIDVDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLNIQMLPSGDWHCPNCTCKFCGMADGSNAEDDTTVSELVTCSLCEKKYHTSCIQGVDAVLSDTNNPSTSFCGQGCRELFEHLQKFIGVKQELEAGFSWSLIHRTDPGSDTSVRGFPQRVESNSKLAIALTVMDECFLSIVDRRSEINLIHNVLYNRGSNFNRLNYSGFYTAILERGDEIICAASIRIHGTQLAEMPFIGTRHIYRRQGMCRRLFCAIESALCSLKVEMLIIPAISELMHTWTVGFGFNPLEESHKQELRSLNMLVFPGTDMLQKLLLEQETADGNMTASPGTKSVESKGNNCNTPDLENKSDIDSSNGHDLSIHNHSISQHSNDRNDNVCASDSISLTPAVPLTNPSIMSGASDALHEPEIQGSGEETRCSNSESGDKLNEATEAKCPSPSYASCNVLEIEKHVFDSPGEGDMHSPSEDKVGDARDPNVQVPGEGTICSSSQSRNKLGKPGSDFNCLSASEASHNGKAMVDSPVESNSRPSDECEDGNGLEVNAEAPGEGTICSNSQPSYKLPVSTTGMDFLPASEVSHGILEVEKLVSDSLVEGNVLSCAEGEAGDAHEVNTQVSGNGITGSNSCFKDKVAEPPSDVKPLSPSDESFNIEFKKPVLASPVEVNIQSSTKGEVDDAHEVGDSVASVEPVSSEISAQKITEEVDKNQKPLPVSTFDGTDESTIQSNSNFNNQSAFEMEGKSHVALEVASNANDYEENRLKVSAENSGTDECEGKAGSISV* 1265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5188838 5200736 + Vvi5g496 Vvi5g496 786638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g496 1264 ProSitePatterns Zinc finger PHD-type signature. 502 541 IPR019786 -
Vvi5g496 1264 SUPERFAMILY FYVE/PHD zinc finger 492 547 IPR011011 -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 1195 1219 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 894 924 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 257 277 - -
Vvi5g496 1264 SMART PHD_3 543 601 IPR001965 -
Vvi5g496 1264 SMART PHD_3 501 542 IPR001965 -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 41 68 - -
Vvi5g496 1264 PANTHER PHD FINGER FAMILY PROTEIN 260 345 - -
Vvi5g496 1264 PANTHER PHD FINGER FAMILY PROTEIN 357 1193 - -
Vvi5g496 1264 PANTHER PHD FINGER FAMILY PROTEIN 1 195 - -
Vvi5g496 1264 CDD PHD2_CHD_II 502 541 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 845 865 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 968 984 - -
Vvi5g496 1264 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 688 779 IPR016181 -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 809 865 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 220 277 - -
Vvi5g496 1264 Pfam Tify domain binding domain 424 474 IPR032308 -
Vvi5g496 1264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 491 561 IPR013083 -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 941 1023 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 174 199 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 1152 1219 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 809 836 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 1245 1264 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 24 79 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 941 960 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 174 203 - -
Vvi5g496 1264 Pfam PHD-finger 502 544 IPR019787 -
Vvi5g496 1264 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 357 1193 - -
Vvi5g496 1264 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 195 - -
Vvi5g496 1264 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 260 345 - -
Vvi5g496 1264 ProSiteProfiles Zinc finger PHD-type profile. 499 544 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g496 - - - vvi:100247619 2375.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g496 Vvi7g89 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006686 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14852 PF16135 TDBD 4.40E-21 No_clan Vvi TR