Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g499 ATGTTTGCCCTCACTTCCATCAAGGGTATTGGTCGCCGTTTCGCCAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAAAGAGCTGGTGAACTATCTGCTGCTGAGCTCGAGAACCTGATGGTGATTGTGGCGAATCCTCGTCAGTTTAAGATCCCTGACTGGTTTCTGAACAGGAAGAAAGATTACAAAGATGGTAGATATTCTCAGGTTGTTTCTAATGCATTGGACATGAAGCTCAGGGATGATCTTGAGCGTTTGAAGAAGATCAGGAACCACCGTGGTCTTCGACACTACTGGGGTCTACGTGTACGCGGACAACACACCAAGACAACTGGCCGCAGAGGGAAAACTGTTGGTGTCTCAAAAAAGCGTTAA 381 46.98 MFALTSIKGIGRRFANIVCKKADVDMNKRAGELSAAELENLMVIVANPRQFKIPDWFLNRKKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR* 127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5212913 5215828 + Vvi5g499 Vvi5g499 786641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g499 126 ProSiteProfiles Ribosomal protein S13 family profile. 1 119 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vvi5g499 126 PIRSF RPS13p_RPS13a_RPS18e_RPS13o 1 126 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vvi5g499 126 ProSitePatterns Ribosomal protein S13 signature. 95 108 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vvi5g499 126 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 1 126 - -
Vvi5g499 126 SUPERFAMILY S13-like H2TH domain 2 126 IPR010979 GO:0003676
Vvi5g499 126 Gene3D 30s ribosomal protein s13, domain 2 66 116 IPR027437 -
Vvi5g499 126 PANTHER 40S RIBOSOMAL PROTEIN S18-RELATED 1 126 - -
Vvi5g499 126 Pfam Ribosomal protein S13/S18 2 116 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vvi5g499 126 Gene3D - 1 54 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g499 Vvi7g89 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g499 K02964 - vvi:100245272 250.751