Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g5 ATGAACGAGAAGGCTGCTCCCGAGATTCTCCATTTTCAAACTAGAGAACAGATCCAGTTGATGGTACTATACTCGAAATTTTCTTTCTTTCTTATGGAGGATCCTGAAGAAACTGTGGAGGAATTTGGAGAAAATGGTACTGATCCACTAACTGTATCACTCTATCAGATGAACTTGGATAGGACTCAGTTTTTGTTGAGATCATATCTTCAAATTCGTCTTCAGAAGATTGAGAAATACATGTTCCACATCTTAAAAACTGATGTTTGGAGTTGGCTTTCTGAGCAAGAGCAAAAGTTTGCCAAAAGGTGTACTGATGACATGGAAAGACATCTTGAACAGTCTGTTCTCTCAAGATTGCCAGATGGTTACCAGTCTATTTTAAAGCAGTCCGTAGCAAGTGAAGAGGATGACATGGTTCCGGAGCCACGGTTGGACACCTTTGTCTTCTACAAAAGCAAAGGATCTATCGAAGCTTTCCAGCTTGATGACAGCAAAGAAGTGGTGGACCTGGTTGCTGATGATTTATACATTCTTCGCTACAACTCAGTAAATCCACTCATAGAAAGTGGCCAAATTGATTTGGTGTAA 591 40.27 MNEKAAPEILHFQTREQIQLMVLYSKFSFFLMEDPEETVEEFGENGTDPLTVSLYQMNLDRTQFLLRSYLQIRLQKIEKYMFHILKTDVWSWLSEQEQKFAKRCTDDMERHLEQSVLSRLPDGYQSILKQSVASEEDDMVPEPRLDTFVFYKSKGSIEAFQLDDSKEVVDLVADDLYILRYNSVNPLIESGQIDLV* 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 65306 83720 + Vvi5g5 Vvi5g5 786147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g5 196 Pfam DNA replication complex GINS protein SLD5 C-terminus 143 196 IPR031633 -
Vvi5g5 196 PIRSF GINS_Sld5 1 196 IPR008591 GO:0006261
Vvi5g5 196 PANTHER SLD5 PROTEIN 2 196 IPR008591 GO:0006261
Vvi5g5 196 Pfam GINS complex protein 31 88 IPR021151 -
Vvi5g5 196 SUPERFAMILY GINS helical bundle-like 1 128 IPR036224 -
Vvi5g5 196 Gene3D - 1 186 - -
Vvi5g5 196 SUPERFAMILY PriA/YqbF domain 145 196 - -
Vvi5g5 196 CDD GINS_A_Sld5 1 117 IPR038749 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g5 K10735 GINS4, SLD5; GINS complex subunit 4 - vri:117914731 330.102
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g5 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009909 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 29