Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g511 ATGCCTTTTCTCAGCCCCAACTCGCTCGCCTCCCTAGTGGAATCGGCCGTGTCAACTCAATGCTCCCGCTTAGGCAGAGCTGCCCATGCTCAGATCATCAAGACCCTCGACAACCCCCTCCCTTCTTTCATTTACAATCACCTTGTCAACATGTATTCCAAACTCGACCGTCCCAACTCAGCCCAACTCCTCCTCTCACTCACCCCCAACCGCTCCGTTGTCACCTGGACCGCTCTCATCGCCGGCTCCGTCCAAAACGGTCGTTTCACCTCTGCCCTCTTTCACTTCTCTAACATGCGCCGTGACTCCATCCAACCCAATGACTTCACCTTCCCCTGTGCCTTCAAGGCTTCCGGCTCGCTTCGCTCTCCTCTCGTCGGGAAACAGGTCCATGCATTGGCGGTCAAGGCCGGTCAGATTAGCGATGTTTTTGTTGGATGTAGTGCTTTTGATATGTACTCCAAAGCGGGCCTCACAGAGGAGGCTAGGAAGATGTTCGATGAAATGCCTGAAAGAAATATTGCGACGTGGAACGCGTATTTATCTAATTCAGTGCTCGAGGGCCGGTATGACGATGCGCTTACTGCATTCATTGAGGCTAGGAAAGAAGGCATTGAGCCAACAGATTTCATGGTTTCAAGTGTTCTTAGTGCTTGTGCTGGCCTTTCAGTGCTTGAAGTGGGAAAGTCAGTTCATACGCTTGCTGTGAAGGCTTGTGTTGTGGGCAATATTTTTGTGGGCAGCGCACTTGTTGATATGTATGGAAAATGTGGAAGCATTGAGGATGCTGAGAGGGCATTTGATGAGATGCCTGAGAGGAATTTAGTTACTTGGAATGCAATGATAGGTGGGTACGCACACCAAGGGCAAGCTGACATGGCTGTCACATTGTTCGACGAAATGACATGTGGCAGTCACAGGGTTGCACCTAATTATGTTACATTTGTGTGTGTTTTATCAGCATGCAGCAGGGCTGGGTCAGTGAATGTGGGCATGGAAATTTTTGAGTCAATGAGAGGAAGATACGGAATTGAACCAGGAGCAGAGCATTATGCATGTGTTGTGGACCTGCTTGGGAGAGCAGGAATGGTAGAGCAAGCCTATCAGTTTATAAAGAAAATGCCAATTCGACCAACAGTTTCAGTTTGGGGGGCTCTTTTAGGAGCTTCTAAAATGTTTGGGAAGTCAGAATTGGGAAAGGTTGCCGCTGATAACTTATTTGAACTAGACCCACTAGACTCTGGCAACCATGTTCTGCTTTCAAATATGTTTGCAGCTGCTGGCAGGTGGGAAGAAGCCACACTTGTGAGAAAGGAGATGAAGGATGTCGGGATCAAAAAGGGTGCAGGATGCAGTTGGATCACTGCAGGGAATGCAGTCCATGTCTTCCAAGCAAAGGATACTTCCCATGAGAGAAACTCAGAGATTCAGGCAATGCTGGCAAAGCTGAGGGGGGAAATGGAGGCAGCTGGCTATATACCCGATACCAGTTTTGCTCTGTTTGATCTAGAAGAAGAAGAGAAAGCGATGGAAGTTTGGTACCACAGTGAAAAGATTGCCCTTGCTTTTGGCCTCATCTCTATTCCTGCTGGAGTACCCATAAGGATCACCAAAAATCTTAGAATTTGTGGAGATTGTCATAGTGCCATTAAGTTCATTTCCGGCATTGTTGGTAGAGAAATTATTGTGAGAGATAATAATCTATTCCATCGCTTCAGGGATAATCAGTGCTCTTGTAGGGATTATTGGTGA 1752 47.6 MPFLSPNSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW* 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5303086 5305764 - Vvi5g511 Vvi5g511 786653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g511 583 Pfam DYW family of nucleic acid deaminases 491 583 IPR032867 GO:0008270
Vvi5g511 583 Pfam E motif 396 454 IPR046848 -
Vvi5g511 583 Pfam PPR repeat 151 174 IPR002885 -
Vvi5g511 583 Pfam PPR repeat 351 374 IPR002885 -
Vvi5g511 583 PANTHER OS07G0578800 PROTEIN-RELATED 192 573 IPR045215 GO:0003723|GO:0009451
Vvi5g511 583 PANTHER OS07G0578800 PROTEIN-RELATED 3 200 IPR045215 GO:0003723|GO:0009451
Vvi5g511 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 72 106 IPR002885 -
Vvi5g511 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Vvi5g511 583 Gene3D Tetratricopeptide repeat domain 304 490 IPR011990 GO:0005515
Vvi5g511 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 273 IPR002885 -
Vvi5g511 583 Gene3D Tetratricopeptide repeat domain 226 303 IPR011990 GO:0005515
Vvi5g511 583 PANTHER OS11G0583200 PROTEIN 192 573 - -
Vvi5g511 583 PANTHER OS11G0583200 PROTEIN 3 200 - -
Vvi5g511 583 Gene3D Tetratricopeptide repeat domain 131 225 IPR011990 GO:0005515
Vvi5g511 583 Gene3D Tetratricopeptide repeat domain 4 130 IPR011990 GO:0005515
Vvi5g511 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Vvi5g511 583 TIGRFAM PPR: pentatricopeptide repeat domain 276 302 IPR002885 -
Vvi5g511 583 TIGRFAM PPR: pentatricopeptide repeat domain 249 275 IPR002885 -
Vvi5g511 583 TIGRFAM PPR: pentatricopeptide repeat domain 150 174 IPR002885 -
Vvi5g511 583 TIGRFAM PPR: pentatricopeptide repeat domain 313 347 IPR002885 -
Vvi5g511 583 Pfam PPR repeat family 72 116 IPR002885 -
Vvi5g511 583 Pfam PPR repeat family 274 323 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g511 - - - vvi:100261298 842.417
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g511 . . . . . Bpe14g01189 . . . . . Cma14g01709 . Car14g01544 . . . Bhi01g00809 . . . . . Lcy11g1547 . . . . . . . . Cone10ag0051 . . . . . Cme06g00608 Blo02g00537 . . Bda13g00119 . . Bma02g00845 . . . Cmo14g01753 . . . . . . . . . . . . . . . . . . . . . Csa03g01327 Chy06g00578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010596 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 30