Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g518 ATGTCGCAGACTGCCTTAGCACTCCCTCCTAACCCAAACCCCGCCACACCCACCACCCTCCACAGCCACCACACCCTCTTCTCAGCTCTCTCCTCCGCTACCTCTCTTACCCACCTTAAACAAGTCCACGCCCAAATCCTTCGATCCAAACTTGACCGCTCCACCTCACTCCTCGTCAAACTCGTCATCTCCTCCTGCGCTCTCTCCTCCAGCCTCGACTACGCTCTCTCTGTCTTCAACCTCATTCCCAAGCCCGAAACTCACCTCTGCAACCGCTTCCTGCGCGAGCTGTCGAGGAGTGAGGAGCCGGAGAAAACTCTTTTGGTGTACGAGAGAATGAGGACGCAAGGATTGGCCGTGGACAGGTTCAGCTTTCCGCCCCTCTTGAAAGCATTGTCGAGAGTGAAGTCTCTGGTTGAAGGGCTGGAGATTCATGGATTGGCTGCTAAGTTGGGGTTTGACTCGGACCCCTTTGTTCAAACTGGTTTGGTACGAATGTACGCGGCTTGTGGGCGGATTGCAGAGGCGAGGTTGATGTTTGATAAAATGTTCCACCGGGATGTTGTCACATGGAGCATTATGATTGACGGATATTGTCAGAGTGGCCTTTTCAATGATGCTTTGCTGCTATTTGAAGAGATGAAGAACTATAATGTGGAGCCTGATGAGATGATGCTTTCTACAGTTCTTTCTGCTTGTGGCCGTGCTGGAAATTTAAGTTATGGGAAAATGATCCATGATTTCATTATGGAGAATAATATTGTGGTTGATCCTCATTTGCAGAGTGCTCTTGTCACCATGTATGCAAGTTGTGGCTCCATGGATTTGGCTCTGAATTTATTTGAGAAGATGACACCAAAAAACCTTGTTGCTTCAACTGCTATGGTTACTGGGTATTCAAAACTTGGACAGATTGAAAATGCTCGCTCAGTTTTCAATCAAATGGTTAAAAAGGACTTGGTCTGTTGGAGTGCTATGATATCTGGTTATGCTGAGAGTGATAGTCCTCAAGAAGCTCTTAATTTGTTCAATGAAATGCAATCTTTGGGAATAAAACCTGATCAAGTTACCATGTTGAGTGTTATCACAGCTTGTGCTCATCTTGGTGCATTGGATCAAGCCAAATGGATCCATTTATTTGTTGATAAGAATGGTTTTGGGGGAGCTTTGCCTATTAACAATGCCCTTATTGAAATGTATGCCAAATGTGGGAGTTTGGAGAGAGCAAGAAGAATTTTTGATAAGATGCCCAGAAAAAATGTGATATCCTGGACCTGCATGATCAGTGCCTTTGCCATGCATGGGGATGCCGGTAGTGCATTGAGGTTCTTCCATCAAATGGAAGATGAAAATATTGAACCCAATGGGATTACATTTGTTGGTGTACTTTATGCTTGTAGCCATGCAGGATTGGTTGAGGAGGGTCGCAAGATCTTTTACTCAATGATTAATGAGCACAACATCACCCCAAAACATGTGCACTATGGTTGCATGGTAGATCTCTTTGGCCGTGCTAATCTCCTTAGAGAAGCCCTTGAGCTTGTAGAGGCTATGCCTTTGGCACCAAATGTTATCATCTGGGGATCTTTGATGGCTGCTTGCCGAGTCCATGGTGAGATTGAATTAGGAGAATTTGCAGCAAAAAGGCTTCTTGAGCTAGATCCAGATCATGATGGGGCTCATGTGTTCTTGTCAAACATCTATGCCAAAGCAAGGAGATGGGAGGATGTTGGACAAGTGAGGAAATTGATGAAACATAAAGGGATTTCTAAGGAAAGAGGATGCAGTAGATTTGAACTGAACAATGAGATACATGAGTTTTTGGTGGCAGATAGGAGTCATAAACATGCAGATGAGATATATGAAAAGCTATATGAGGTGGTTAGCAAGTTGAAGCTGGTTGGTTATTCTCCAAATACCTGTAGCATTTTGGTTGATTTAGAAGAAGAAGAAAAAAAGGAAGTGGTTCTATGGCACAGTGAGAAGTTGGCACTTTGTTATGGGCTTATGAGGGATGGAACAGGGTCTTGCATACGTATAATTAAGAATCTTAGGGTCTGTGAGGACTGCCATACCTTTATTAAGTTGGCATCAAAGGTGTATGAAAGAGAGATTGTTGTCAGAGATAGGACTAGGTTTCACCATTACAAAGATGGTGTATGTTCTTGTAAAGATTATTGGTAA 2184 43.91 MSQTALALPPNPNPATPTTLHSHHTLFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADEIYEKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCYGLMRDGTGSCIRIIKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW* 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5347964 5350466 + Vvi5g518 Vvi5g518 786660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g518 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Vvi5g518 727 PANTHER - 194 300 - -
Vvi5g518 727 PANTHER - 301 720 - -
Vvi5g518 727 PANTHER - 30 216 - -
Vvi5g518 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 318 IPR002885 -
Vvi5g518 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Vvi5g518 727 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 301 720 - -
Vvi5g518 727 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 194 300 - -
Vvi5g518 727 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 30 216 - -
Vvi5g518 727 Gene3D Tetratricopeptide repeat domain 392 663 IPR011990 GO:0005515
Vvi5g518 727 Gene3D Tetratricopeptide repeat domain 86 243 IPR011990 GO:0005515
Vvi5g518 727 Pfam DYW family of nucleic acid deaminases 635 727 IPR032867 GO:0008270
Vvi5g518 727 Gene3D Tetratricopeptide repeat domain 244 387 IPR011990 GO:0005515
Vvi5g518 727 Pfam E+ motif 604 630 IPR046849 -
Vvi5g518 727 Pfam PPR repeat family 186 233 IPR002885 -
Vvi5g518 727 Pfam PPR repeat family 318 366 IPR002885 -
Vvi5g518 727 Pfam PPR repeat family 419 466 IPR002885 -
Vvi5g518 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Vvi5g518 727 SUPERFAMILY TPR-like 161 580 IPR011990 GO:0005515
Vvi5g518 727 Pfam PPR repeat 263 284 IPR002885 -
Vvi5g518 727 Pfam PPR repeat 493 518 IPR002885 -
Vvi5g518 727 Pfam E motif 537 597 IPR046848 -
Vvi5g518 727 TIGRFAM PPR: pentatricopeptide repeat domain 189 223 IPR002885 -
Vvi5g518 727 TIGRFAM PPR: pentatricopeptide repeat domain 321 354 IPR002885 -
Vvi5g518 727 TIGRFAM PPR: pentatricopeptide repeat domain 394 420 IPR002885 -
Vvi5g518 727 TIGRFAM PPR: pentatricopeptide repeat domain 293 322 IPR002885 -
Vvi5g518 727 TIGRFAM PPR: pentatricopeptide repeat domain 422 455 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g518 - - - vvi:100264876 1431.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g518 . . . . . . . . . . Cma06g01402 . Car06g01210 . . Cpe08g00265 . Bhi01g00798 . . . . . . . . . . . . . Cone14ag0857 . . . Lsi05g01611 . . . . . . . . . . . . Cmo06g01406 . . . . . . . . . . . . . . Cla05g00537 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014354 0 1 0 0 0 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 0 0 1 1 0 1 1 1 1 1 21